Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002476A_C01 KMC002476A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02497 hypothetical protein At2g38480 [imported] - Arabidop... 93 2e-18
ref|NP_565891.1| expressed protein; protein id: At2g38480.1, sup... 93 2e-18
gb|AAO60016.1| hypothetical protein [Oryza sativa (japonica cult... 92 4e-18
gb|AAM62879.1| unknown [Arabidopsis thaliana] 92 5e-18
gb|AAO22748.1| unknown protein [Arabidopsis thaliana] 67 2e-10
>pir||T02497 hypothetical protein At2g38480 [imported] - Arabidopsis thaliana
Length = 243
Score = 92.8 bits (229), Expect = 2e-18
Identities = 54/118 (45%), Positives = 82/118 (68%), Gaps = 2/118 (1%)
Frame = -2
Query: 540 KHGGWKDFDKYEEFRHLLATAIISSLYTGYQVFRQVQELYTEINLLRPRSAVLITFSFVG 361
KHG ++F+ YEE+R++LA +IIS+LYT +Q F +++ + R+++L+ FS G
Sbjct: 125 KHGYGRNFNDYEEYRYVLAISIISTLYTAWQTFAH----FSKREIFDRRTSILVDFS--G 178
Query: 360 DQVMAYLMMSSSIIRDST*P--SGMRSVEDNIFTDSLAAAISMSFFAFLCLALSALIS 193
DQ++AYL++S++ S P + R +DNIFTDS A+AISM+ FAF+ LALSAL S
Sbjct: 179 DQIVAYLLISAA---SSAIPLTNIFREGQDNIFTDSAASAISMAIFAFIALALSALFS 233
>ref|NP_565891.1| expressed protein; protein id: At2g38480.1, supported by cDNA:
16674., supported by cDNA: gi_13878170, supported by
cDNA: gi_17104526 [Arabidopsis thaliana]
gi|13878171|gb|AAK44163.1|AF370348_1 unknown protein
[Arabidopsis thaliana] gi|17104527|gb|AAL34152.1|
unknown protein [Arabidopsis thaliana]
gi|20197244|gb|AAM14993.1| expressed protein
[Arabidopsis thaliana] gi|20197397|gb|AAC67370.2|
expressed protein [Arabidopsis thaliana]
Length = 188
Score = 92.8 bits (229), Expect = 2e-18
Identities = 54/118 (45%), Positives = 82/118 (68%), Gaps = 2/118 (1%)
Frame = -2
Query: 540 KHGGWKDFDKYEEFRHLLATAIISSLYTGYQVFRQVQELYTEINLLRPRSAVLITFSFVG 361
KHG ++F+ YEE+R++LA +IIS+LYT +Q F +++ + R+++L+ FS G
Sbjct: 70 KHGYGRNFNDYEEYRYVLAISIISTLYTAWQTFAH----FSKREIFDRRTSILVDFS--G 123
Query: 360 DQVMAYLMMSSSIIRDST*P--SGMRSVEDNIFTDSLAAAISMSFFAFLCLALSALIS 193
DQ++AYL++S++ S P + R +DNIFTDS A+AISM+ FAF+ LALSAL S
Sbjct: 124 DQIVAYLLISAA---SSAIPLTNIFREGQDNIFTDSAASAISMAIFAFIALALSALFS 178
>gb|AAO60016.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 156
Score = 92.0 bits (227), Expect = 4e-18
Identities = 54/115 (46%), Positives = 71/115 (60%)
Frame = -2
Query: 537 HGGWKDFDKYEEFRHLLATAIISSLYTGYQVFRQVQELYTEINLLRPRSAVLITFSFVGD 358
HGG +DFD Y E+ + L +II+ LYT QV R V L +++ R A + F GD
Sbjct: 34 HGGAQDFDNYPEYTYCLGISIIAVLYTTAQVTRDVHRLSWGRDVIAGRKAAAVV-DFAGD 92
Query: 357 QVMAYLMMSSSIIRDST*PSGMRSVEDNIFTDSLAAAISMSFFAFLCLALSALIS 193
QV+AYL+MS+ + + MR DN+FTDS AAAISM+F AFL LSAL+S
Sbjct: 93 QVVAYLLMSA-LSAAAPVTDYMRQAADNLFTDSAAAAISMAFLAFLAAGLSALVS 146
>gb|AAM62879.1| unknown [Arabidopsis thaliana]
Length = 188
Score = 91.7 bits (226), Expect = 5e-18
Identities = 53/118 (44%), Positives = 82/118 (68%), Gaps = 2/118 (1%)
Frame = -2
Query: 540 KHGGWKDFDKYEEFRHLLATAIISSLYTGYQVFRQVQELYTEINLLRPRSAVLITFSFVG 361
KHG ++F+ YEE+R++L+ +IIS+LYT +Q F +++ + R+++L+ FS G
Sbjct: 70 KHGYGRNFNDYEEYRYVLSISIISTLYTAWQTFAH----FSKREIFDRRTSILVDFS--G 123
Query: 360 DQVMAYLMMSSSIIRDST*P--SGMRSVEDNIFTDSLAAAISMSFFAFLCLALSALIS 193
DQ++AYL++S++ S P + R +DNIFTDS A+AISM+ FAF+ LALSAL S
Sbjct: 124 DQIVAYLLISAA---SSAIPLTNIFREGQDNIFTDSAASAISMAIFAFIALALSALFS 178
>gb|AAO22748.1| unknown protein [Arabidopsis thaliana]
Length = 283
Score = 66.6 bits (161), Expect = 2e-10
Identities = 41/118 (34%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Frame = -2
Query: 540 KHGGWK--DFDKYEEFRHLLATAIISSLYTGYQVFRQVQELYTEINLLRPRSAVLITFSF 367
K GW FD+Y+E+R L+ +++ +Y+ +Q L E +L+ L F F
Sbjct: 158 KTKGWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVKEKHLISHHLRPL--FEF 215
Query: 366 VGDQVMAYLMMSSSIIRDST*PSGMRSVEDNIFTDSLAAAISMSFFAFLCLALSALIS 193
+ DQV+AYL+MS+S + + + + FT+ +A+I+MSF AFL A S+LIS
Sbjct: 216 IIDQVLAYLLMSASTAAVTRVDDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSLIS 273
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,737,653
Number of Sequences: 1393205
Number of extensions: 8971485
Number of successful extensions: 21569
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21555
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
