Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002474A_C01 KMC002474A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181291.1| putative ADP ribosylation factor 1 GTPase activ... 54 2e-06
ref|NP_190939.1| putative protein; protein id: At3g53710.1 [Arab... 53 2e-06
gb|AAO72580.1| ADP ribosylation GTPase-like protein [Oryza sativ... 52 4e-06
gb|AAG17006.1|AF184146_1 ARF GAP-like zinc finger-containing pro... 36 0.26
ref|XP_192984.2| similar to dentin sialophosphoprotein [Mus musc... 33 2.2
>ref|NP_181291.1| putative ADP ribosylation factor 1 GTPase activating protein;
protein id: At2g37550.1, supported by cDNA: gi_14334619,
supported by cDNA: gi_16930688, supported by cDNA:
gi_17104724, supported by cDNA: gi_4519791 [Arabidopsis
thaliana] gi|7485439|pir||T02521 hypothetical protein
At2g37550 [imported] - Arabidopsis thaliana
gi|3236238|gb|AAC23626.1| putative ADP ribosylation
factor 1 GTPase activating protein [Arabidopsis
thaliana] gi|4519792|dbj|BAA75744.1| Asp1 [Arabidopsis
thaliana] gi|14334620|gb|AAK59488.1| putative ADP
ribosylation factor 1 GTPase activating protein
[Arabidopsis thaliana]
gi|16930689|gb|AAL32010.1|AF436828_1 At2g37550/F13M22.5
[Arabidopsis thaliana] gi|17104725|gb|AAL34251.1|
putative ADP ribosylation factor 1 GTPase activating
protein [Arabidopsis thaliana]
gi|21655301|gb|AAM65362.1| At2g37550/F13M22.5
[Arabidopsis thaliana]
Length = 456
Score = 53.5 bits (127), Expect = 2e-06
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 8/49 (16%)
Frame = -2
Query: 543 SSPHNNDSWAGWDD--AKDDDF------DNKASDHNGTSGSGWTGGGFL 421
S+ ++ WAGWDD AKDDDF D K+ HNG S + WTGGGFL
Sbjct: 408 SNDDDDGGWAGWDDNDAKDDDFYYQPASDKKSVGHNGKSDTAWTGGGFL 456
>ref|NP_190939.1| putative protein; protein id: At3g53710.1 [Arabidopsis thaliana]
gi|11357815|pir||T45911 hypothetical protein F5K20.10 -
Arabidopsis thaliana gi|7629991|emb|CAB88333.1| putative
protein [Arabidopsis thaliana]
Length = 459
Score = 53.1 bits (126), Expect = 2e-06
Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 10/51 (19%)
Frame = -2
Query: 543 SSPHNNDSWAGWDD--AKDDDFDN--------KASDHNGTSGSGWTGGGFL 421
S+ +++D W GWDD AKDD FD K++ HNG S + WTGGGFL
Sbjct: 409 SASNDDDGWTGWDDHDAKDDGFDGHYQSAGDKKSAGHNGKSDTAWTGGGFL 459
>gb|AAO72580.1| ADP ribosylation GTPase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 308
Score = 52.4 bits (124), Expect = 4e-06
Identities = 25/44 (56%), Positives = 31/44 (69%), Gaps = 8/44 (18%)
Frame = -2
Query: 531 NNDSWAGWDDAKDDDFD-------NKASDHNGTS-GSGWTGGGF 424
++DSWAGWDD KDD+FD +K S+ NGT+ GS WT GGF
Sbjct: 264 SSDSWAGWDDGKDDNFDSYNHSTPSKGSNQNGTTGGSYWTEGGF 307
>gb|AAG17006.1|AF184146_1 ARF GAP-like zinc finger-containing protein ZIGA2 [Arabidopsis
thaliana]
Length = 458
Score = 36.2 bits (82), Expect = 0.26
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 10/41 (24%)
Frame = -2
Query: 543 SSPHNNDSWAGWD--DAKDDDF--------DNKASDHNGTS 451
S+ +++D W GWD DAKDD F D K++ HNG S
Sbjct: 409 SASNDDDGWTGWDDHDAKDDGFDGHYQSAGDKKSAGHNGKS 449
>ref|XP_192984.2| similar to dentin sialophosphoprotein [Mus musculus]
Length = 943
Score = 33.1 bits (74), Expect = 2.2
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 534 HNNDSWAGWDDAKDDDFDNKASDHNGTSGSGWTGGG 427
+++DS AG DD+ DD D SD NG S G G
Sbjct: 492 NDSDSHAGEDDSSDDSSDTDDSDSNGDGDSDSNGDG 527
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,407,177
Number of Sequences: 1393205
Number of extensions: 11260069
Number of successful extensions: 37720
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 34829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37431
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
