Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002467A_C01 KMC002467A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_671865.1| unknown protein; protein id: At2g18465.1 [Arabi... 102 2e-21
gb|AAM97127.1| unknown protein [Arabidopsis thaliana] gi|2489965... 102 2e-21
ref|NP_181738.1| unknown protein; protein id: At2g42080.1 [Arabi... 86 3e-16
gb|AAL87325.1| unknown protein [Arabidopsis thaliana] 82 4e-15
emb|CAB53495.1| CAA303722.1 protein [Oryza sativa] 67 1e-10
>ref|NP_671865.1| unknown protein; protein id: At2g18465.1 [Arabidopsis thaliana]
Length = 257
Score = 102 bits (255), Expect = 2e-21
Identities = 45/62 (72%), Positives = 55/62 (88%)
Frame = -2
Query: 454 SDRTILGLPSTGPLKIEDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCVNAYKTLCNA 275
S+R +LGLP GP+K++DVKNAFR SALKWHPDKHQG SQ A+EKFKLCV+AYK+LC+A
Sbjct: 196 SERIVLGLPLDGPIKVDDVKNAFRSSALKWHPDKHQGPSQVAAQEKFKLCVDAYKSLCSA 255
Query: 274 LS 269
L+
Sbjct: 256 LA 257
>gb|AAM97127.1| unknown protein [Arabidopsis thaliana] gi|24899655|gb|AAN65042.1|
unknown protein [Arabidopsis thaliana]
Length = 268
Score = 102 bits (255), Expect = 2e-21
Identities = 45/62 (72%), Positives = 55/62 (88%)
Frame = -2
Query: 454 SDRTILGLPSTGPLKIEDVKNAFRLSALKWHPDKHQGSSQAMAEEKFKLCVNAYKTLCNA 275
S+R +LGLP GP+K++DVKNAFR SALKWHPDKHQG SQ A+EKFKLCV+AYK+LC+A
Sbjct: 207 SERIVLGLPLDGPIKVDDVKNAFRSSALKWHPDKHQGPSQVAAQEKFKLCVDAYKSLCSA 266
Query: 274 LS 269
L+
Sbjct: 267 LA 268
>ref|NP_181738.1| unknown protein; protein id: At2g42080.1 [Arabidopsis thaliana]
gi|25408783|pir||F84849 hypothetical protein At2g42080
[imported] - Arabidopsis thaliana
gi|1871176|gb|AAB63536.1| unknown protein [Arabidopsis
thaliana] gi|22531201|gb|AAM97104.1| unknown protein
[Arabidopsis thaliana] gi|25083942|gb|AAN72139.1|
unknown protein [Arabidopsis thaliana]
Length = 263
Score = 85.5 bits (210), Expect = 3e-16
Identities = 42/85 (49%), Positives = 57/85 (66%), Gaps = 6/85 (7%)
Frame = -2
Query: 505 DDESDNEDHGSCCVGSSSD------RTILGLPSTGPLKIEDVKNAFRLSALKWHPDKHQG 344
D++ + ED+ S S S+ R LGL +GPL ++DVK+A+R ALKWHPD+HQG
Sbjct: 177 DEDEEEEDYTSDSSDSESEPNQVSHRQALGLSPSGPLNLKDVKHAYRTCALKWHPDRHQG 236
Query: 343 SSQAMAEEKFKLCVNAYKTLCNALS 269
S++ AE KFKLC AY++LC LS
Sbjct: 237 STKEAAEAKFKLCSVAYQSLCEKLS 261
>gb|AAL87325.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 82.0 bits (201), Expect = 4e-15
Identities = 42/90 (46%), Positives = 56/90 (61%), Gaps = 7/90 (7%)
Frame = -2
Query: 517 RTASDDESDNEDHGSCCVGSS-------SDRTILGLPSTGPLKIEDVKNAFRLSALKWHP 359
R ++E + E++ G S S R LGL S+GPL +EDVK A+R ALKWHP
Sbjct: 163 RLDEEEEEEEEEYEYSSTGVSDTEPNQESHRQTLGLSSSGPLNLEDVKIAYRACALKWHP 222
Query: 358 DKHQGSSQAMAEEKFKLCVNAYKTLCNALS 269
D+H S++ AEEKFKLC AY++LC L+
Sbjct: 223 DRHHTSTKNEAEEKFKLCTVAYQSLCEKLA 252
>emb|CAB53495.1| CAA303722.1 protein [Oryza sativa]
Length = 308
Score = 67.0 bits (162), Expect = 1e-10
Identities = 39/83 (46%), Positives = 49/83 (58%), Gaps = 1/83 (1%)
Frame = -2
Query: 508 SDDESDNEDHGSCCVGSSSDRTILGLPSTGPLKIEDVKNAFRLSALKWHPDKHQGSSQ-A 332
SDDES++E +GS + R ILGLP+ GPL ++ VK A W + A
Sbjct: 232 SDDESEDETTN---IGSHAHRAILGLPACGPLTLDAVKTA---QCTDWSVTNQCAKQRMA 285
Query: 331 MAEEKFKLCVNAYKTLCNALSPA 263
+AEEKFKLCVNAY +LCN L A
Sbjct: 286 VAEEKFKLCVNAYNSLCNVLKAA 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,375,620
Number of Sequences: 1393205
Number of extensions: 8397384
Number of successful extensions: 21424
Number of sequences better than 10.0: 622
Number of HSP's better than 10.0 without gapping: 20424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21276
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
