Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002458A_C01 KMC002458A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200660.1| protein kinase - like; protein id: At5g58520.1 ... 132 3e-30
dbj|BAB10268.1| contains similarity to protein kinase~gene_id:MQ... 128 5e-29
ref|NP_196331.1| putative protein; protein id: At5g07140.1 [Arab... 125 5e-28
gb|AAL69496.1| unknown protein [Arabidopsis thaliana] 125 5e-28
pir||T48485 hypothetical protein T28J14.80 - Arabidopsis thalian... 120 1e-26
>ref|NP_200660.1| protein kinase - like; protein id: At5g58520.1 [Arabidopsis
thaliana]
Length = 604
Score = 132 bits (333), Expect = 3e-30
Identities = 60/78 (76%), Positives = 67/78 (84%)
Frame = -1
Query: 595 WMSNVYSFGMVIWEMATGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWN 416
WMSN YSFGMV+WEM TGEAAY++ SPVQAAVGIAACGLRPEIPK+CPQ L++LM CWN
Sbjct: 523 WMSNAYSFGMVLWEMVTGEAAYASCSPVQAAVGIAACGLRPEIPKECPQVLRTLMINCWN 582
Query: 415 NTPSKRPQFSDILAILLR 362
N+PSKRP FS I LLR
Sbjct: 583 NSPSKRPNFSHIHNTLLR 600
>dbj|BAB10268.1| contains similarity to protein kinase~gene_id:MQJ2.14 [Arabidopsis
thaliana]
Length = 591
Score = 128 bits (322), Expect = 5e-29
Identities = 59/77 (76%), Positives = 66/77 (85%)
Frame = -1
Query: 592 MSNVYSFGMVIWEMATGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWNN 413
MSN YSFGMV+WEM TGEAAY++ SPVQAAVGIAACGLRPEIPK+CPQ L++LM CWNN
Sbjct: 511 MSNAYSFGMVLWEMVTGEAAYASCSPVQAAVGIAACGLRPEIPKECPQVLRTLMINCWNN 570
Query: 412 TPSKRPQFSDILAILLR 362
+PSKRP FS I LLR
Sbjct: 571 SPSKRPNFSHIHNTLLR 587
>ref|NP_196331.1| putative protein; protein id: At5g07140.1 [Arabidopsis thaliana]
Length = 576
Score = 125 bits (313), Expect = 5e-28
Identities = 58/78 (74%), Positives = 62/78 (79%)
Frame = -1
Query: 595 WMSNVYSFGMVIWEMATGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWN 416
WMSN YSFGMV+WEM TGE AY + SPVQAAVGIAACGLRP+IPK+CPQ LK LM KCWN
Sbjct: 495 WMSNAYSFGMVLWEMVTGEEAYGSCSPVQAAVGIAACGLRPDIPKECPQVLKYLMIKCWN 554
Query: 415 NTPSKRPQFSDILAILLR 362
PS R FS I ILLR
Sbjct: 555 TCPSTRLNFSQIHCILLR 572
>gb|AAL69496.1| unknown protein [Arabidopsis thaliana]
Length = 600
Score = 125 bits (313), Expect = 5e-28
Identities = 58/78 (74%), Positives = 62/78 (79%)
Frame = -1
Query: 595 WMSNVYSFGMVIWEMATGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWN 416
WMSN YSFGMV+WEM TGE AY + SPVQAAVGIAACGLRP+IPK+CPQ LK LM KCWN
Sbjct: 519 WMSNAYSFGMVLWEMVTGEEAYGSCSPVQAAVGIAACGLRPDIPKECPQVLKYLMIKCWN 578
Query: 415 NTPSKRPQFSDILAILLR 362
PS R FS I ILLR
Sbjct: 579 TCPSTRLNFSQIHCILLR 596
>pir||T48485 hypothetical protein T28J14.80 - Arabidopsis thaliana
gi|7546692|emb|CAB87270.1| putative protein [Arabidopsis
thaliana]
Length = 570
Score = 120 bits (302), Expect = 1e-26
Identities = 57/77 (74%), Positives = 61/77 (79%)
Frame = -1
Query: 592 MSNVYSFGMVIWEMATGEAAYSAYSPVQAAVGIAACGLRPEIPKDCPQTLKSLMTKCWNN 413
MSN YSFGMV+WEM TGE AY + SPVQAAVGIAACGLRP+IPK+CPQ LK LM KCWN
Sbjct: 490 MSNAYSFGMVLWEMVTGEEAYGSCSPVQAAVGIAACGLRPDIPKECPQVLKYLMIKCWNT 549
Query: 412 TPSKRPQFSDILAILLR 362
PS R FS I ILLR
Sbjct: 550 CPSTRLNFSQIHCILLR 566
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,006,971
Number of Sequences: 1393205
Number of extensions: 10915816
Number of successful extensions: 33810
Number of sequences better than 10.0: 2193
Number of HSP's better than 10.0 without gapping: 31332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32424
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
