Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002455A_C01 KMC002455A_c01
(778 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174376.1| hypothetical protein; protein id: At1g30910.1 [... 128 1e-28
gb|AAM65550.1| unknown [Arabidopsis thaliana] 122 8e-27
ref|NP_199285.1| putative protein; protein id: At5g44720.1, supp... 122 8e-27
gb|AAH10619.1|AAH10619 Unknown (protein for MGC:16799) [Homo sap... 72 1e-11
ref|NP_073583.1| hypothetical protein FLJ22390 [Homo sapiens] gi... 72 1e-11
>ref|NP_174376.1| hypothetical protein; protein id: At1g30910.1 [Arabidopsis
thaliana] gi|9755390|gb|AAF98197.1|AC000107_20 F17F8.22
[Arabidopsis thaliana] gi|26452771|dbj|BAC43466.1|
unknown protein [Arabidopsis thaliana]
Length = 318
Score = 128 bits (321), Expect = 1e-28
Identities = 62/116 (53%), Positives = 83/116 (71%)
Frame = -3
Query: 776 NRFRGHILVEGCEPFAEDLWSEIQIGRFSFLGSQMCGRCKITTTDQETAIVGREPLQTLM 597
NRFR +I V+GCEPFAEDLW+EI I F+F G ++C RCK+ T QET I G+EP++TL
Sbjct: 201 NRFRPNIFVDGCEPFAEDLWTEILINGFTFHGVKLCSRCKVPTISQETGIGGQEPIETLR 260
Query: 596 TFRSGKLIRPQDKKNRAMSYFGQYVVWNWNDSSAKGSGKVLKVGDPVYVLQKFSSP 429
TFRS K+++P+ K + + YFGQ +V W D G GK +++GD V VL+K SSP
Sbjct: 261 TFRSDKVLQPKSKPHGKI-YFGQNMV--WKDGFGDGIGKTIEIGDSVVVLRKLSSP 313
>gb|AAM65550.1| unknown [Arabidopsis thaliana]
Length = 308
Score = 122 bits (305), Expect = 8e-27
Identities = 58/117 (49%), Positives = 82/117 (69%), Gaps = 2/117 (1%)
Frame = -3
Query: 776 NRFRGHILVEGCEPFAEDLWSEIQIGRFSFLGSQMCGRCKITTTDQETAIVGR-EPLQTL 600
NRFR +ILV+ C+PF EDLW EI+I F G ++C RCK+ T +QET ++G+ EP +TL
Sbjct: 187 NRFRPNILVDNCDPFGEDLWDEIKINDLVFQGVRLCSRCKVPTVNQETGVMGKAEPTETL 246
Query: 599 MTFRSGKLIRPQDKKNRAMSYFGQYVVWNWNDSSAKGSG-KVLKVGDPVYVLQKFSS 432
M FRS ++ P DKK R +FG+ +VWNWN ++ +G G K +KVGD + V++K S
Sbjct: 247 MKFRSDNVLMP-DKKPRGKVFFGKEMVWNWNLTNTEGEGKKTIKVGDTISVIRKIPS 302
>ref|NP_199285.1| putative protein; protein id: At5g44720.1, supported by cDNA:
4029., supported by cDNA: gi_19423896, supported by
cDNA: gi_21280995 [Arabidopsis thaliana]
gi|2660677|gb|AAC79148.1| unknown protein [Arabidopsis
thaliana] gi|9758376|dbj|BAB08825.1| contains similarity
to unknown~gene_id:K23L20.6 [Arabidopsis thaliana]
gi|19423897|gb|AAL87349.1| unknown protein [Arabidopsis
thaliana] gi|21280996|gb|AAM45094.1| unknown protein
[Arabidopsis thaliana]
Length = 308
Score = 122 bits (305), Expect = 8e-27
Identities = 58/117 (49%), Positives = 82/117 (69%), Gaps = 2/117 (1%)
Frame = -3
Query: 776 NRFRGHILVEGCEPFAEDLWSEIQIGRFSFLGSQMCGRCKITTTDQETAIVGR-EPLQTL 600
NRFR +ILV+ C+PF EDLW EI+I F G ++C RCK+ T +QET ++G+ EP +TL
Sbjct: 187 NRFRPNILVDNCDPFGEDLWDEIKINDLVFQGVRLCSRCKVPTVNQETGVMGKAEPTETL 246
Query: 599 MTFRSGKLIRPQDKKNRAMSYFGQYVVWNWNDSSAKGSG-KVLKVGDPVYVLQKFSS 432
M FRS ++ P DKK R +FG+ +VWNWN ++ +G G K +KVGD + V++K S
Sbjct: 247 MKFRSDNVLMP-DKKPRGKVFFGKEMVWNWNLTNTEGEGKKTIKVGDTISVIRKIPS 302
>gb|AAH10619.1|AAH10619 Unknown (protein for MGC:16799) [Homo sapiens]
Length = 337
Score = 71.6 bits (174), Expect = 1e-11
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Frame = -3
Query: 770 FRGHILVEGCEPFAEDLWSEIQIGRFSFLGSQMCGRCKITTTDQETAIVGR-EPLQTLMT 594
FR +I++ GC+ +AED W E+ IG C RC +TT D +T ++ R EPL+TL +
Sbjct: 237 FRPNIVISGCDVYAEDSWDELLIGDVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKS 296
Query: 593 FRSGKLIRPQDKKNRAMS-YFGQYVVWNWNDSSAKGSGKVLKVGDPVYVL 447
+R P ++K S FGQY V + +KVGDPVY+L
Sbjct: 297 YRQ---CDPSERKLYGKSPLFGQYFVLE--------NPGTIKVGDPVYLL 335
>ref|NP_073583.1| hypothetical protein FLJ22390 [Homo sapiens]
gi|10438758|dbj|BAB15333.1| unnamed protein product
[Homo sapiens]
Length = 151
Score = 71.6 bits (174), Expect = 1e-11
Identities = 42/110 (38%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Frame = -3
Query: 770 FRGHILVEGCEPFAEDLWSEIQIGRFSFLGSQMCGRCKITTTDQETAIVGR-EPLQTLMT 594
FR +I++ GC+ +AED W E+ IG C RC +TT D +T ++ R EPL+TL +
Sbjct: 51 FRPNIVISGCDVYAEDSWDELLIGDVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKS 110
Query: 593 FRSGKLIRPQDKKNRAMS-YFGQYVVWNWNDSSAKGSGKVLKVGDPVYVL 447
+R P ++K S FGQY V + +KVGDPVY+L
Sbjct: 111 YRQ---CDPSERKLYGKSPLFGQYFVLE--------NPGTIKVGDPVYLL 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 678,717,123
Number of Sequences: 1393205
Number of extensions: 14503450
Number of successful extensions: 34246
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 33287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34180
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
