Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002447A_C01 KMC002447A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN76362.1| serpin-like protein [Citrus x paradisi] 248 4e-65
ref|NP_175202.1| serpin, putative; protein id: At1g47710.1 [Arab... 236 2e-61
gb|AAG02411.1|AF284038_1 phloem serpin-1 [Cucurbita maxima] 221 6e-57
pir||T06597 serpin homolog WZS3 - wheat gi|1885346|emb|CAA72274.... 202 3e-51
emb|CAB52709.1| serpin [Triticum aestivum] 201 6e-51
>gb|AAN76362.1| serpin-like protein [Citrus x paradisi]
Length = 389
Score = 248 bits (633), Expect = 4e-65
Identities = 125/196 (63%), Positives = 155/196 (78%)
Frame = +1
Query: 13 LRESIETQTDVSLTIAKLLFSKHSKDKNAVFSPLSLHVVLSILAAGSEGPTLHQLLTFLR 192
+RESI QTDV+L++ K + +KD N VFSP S+HV+LS+++AGS+GPTL QLL+FL+
Sbjct: 1 VRESISNQTDVALSLTKHVALTEAKDSNLVFSPSSIHVLLSLISAGSKGPTLDQLLSFLK 60
Query: 193 SNSTDHLNSFASQLVSVVLSDASSVGGPRLCFADGVWVEQSLTLNPSFKQLVTADYHAAL 372
S S D LN+FAS+LV+VV +D S GGPRL A+GVW+++SL+L +FKQ+V Y AA
Sbjct: 61 SKSDDQLNTFASELVAVVFADGSPSGGPRLSVANGVWIDKSLSLKNTFKQVVDNVYKAAS 120
Query: 373 ASVDFQTKAVEVANEVNAWAEKETNGLVKDLLPAGSVDASTRLIFANALYFKGAWTEKFD 552
VD QTKA EV+ EVN WAEKETNGLVK++LP GSVD STRLIFANALYFKGAW E FD
Sbjct: 121 NQVDSQTKAAEVSREVNMWAEKETNGLVKEVLPPGSVDNSTRLIFANALYFKGAWNETFD 180
Query: 553 ASMTKDCDFHLLDGTS 600
+S TKD DFHLL+G S
Sbjct: 181 SSKTKDYDFHLLNGGS 196
>ref|NP_175202.1| serpin, putative; protein id: At1g47710.1 [Arabidopsis thaliana]
gi|25405891|pir||H96517 protein T2E6.22 [imported] -
Arabidopsis thaliana gi|5668792|gb|AAD46018.1|AC007519_3
Strong similarity to gb|Z15116 serpin (pazx) from
Hordeum vulgare and is a member of the PF|00079 Serpin
family. ESTs gb|R65473, gb|N38150 and gb|AA712968 come
from this gene. [Arabidopsis thaliana]
gi|9802595|gb|AAF99797.1|AC012463_14 T2E6.22
[Arabidopsis thaliana] gi|27311755|gb|AAO00843.1|
serpin, putative [Arabidopsis thaliana]
Length = 391
Score = 236 bits (602), Expect = 2e-61
Identities = 114/196 (58%), Positives = 152/196 (77%)
Frame = +1
Query: 7 MDLRESIETQTDVSLTIAKLLFSKHSKDKNAVFSPLSLHVVLSILAAGSEGPTLHQLLTF 186
MD+RESI Q VS+ +AK + + S++ N +FSP S++VVLSI+AAGS G T Q+L+F
Sbjct: 1 MDVRESISLQNQVSMNLAKHVITTVSQNSNVIFSPASINVVLSIIAAGSAGATKDQILSF 60
Query: 187 LRSNSTDHLNSFASQLVSVVLSDASSVGGPRLCFADGVWVEQSLTLNPSFKQLVTADYHA 366
L+ +STD LNSF+S++VS VL+D S+ GGP+L A+G W+++SL+ PSFKQL+ Y A
Sbjct: 61 LKFSSTDQLNSFSSEIVSAVLADGSANGGPKLSVANGAWIDKSLSFKPSFKQLLEDSYKA 120
Query: 367 ALASVDFQTKAVEVANEVNAWAEKETNGLVKDLLPAGSVDASTRLIFANALYFKGAWTEK 546
A DFQ+KAVEV EVN+WAEKETNGL+ ++LP GS D+ T+LIFANALYFKG W EK
Sbjct: 121 ASNQADFQSKAVEVIAEVNSWAEKETNGLITEVLPEGSADSMTKLIFANALYFKGTWNEK 180
Query: 547 FDASMTKDCDFHLLDG 594
FD S+T++ +FHLLDG
Sbjct: 181 FDESLTQEGEFHLLDG 196
>gb|AAG02411.1|AF284038_1 phloem serpin-1 [Cucurbita maxima]
Length = 389
Score = 221 bits (563), Expect = 6e-57
Identities = 110/199 (55%), Positives = 150/199 (75%), Gaps = 1/199 (0%)
Frame = +1
Query: 7 MDLRESIETQTDVSLTIAK-LLFSKHSKDKNAVFSPLSLHVVLSILAAGSEGPTLHQLLT 183
MD++E+I DV++ I K +L +K N V SPLS++V+LS++AAGS+G L QLL+
Sbjct: 1 MDIKEAIRNHGDVAMAITKRILQHDEAKGSNVVISPLSIYVLLSLVAAGSKGRPLDQLLS 60
Query: 184 FLRSNSTDHLNSFASQLVSVVLSDASSVGGPRLCFADGVWVEQSLTLNPSFKQLVTADYH 363
FL+SNS D+LN+FAS ++ V +DASS GGPRL F +GVW++QSL+L SF+Q+V Y
Sbjct: 61 FLKSNSIDNLNAFASHIIDKVFADASSCGGPRLAFVNGVWIDQSLSLKSSFQQVVDKYYK 120
Query: 364 AALASVDFQTKAVEVANEVNAWAEKETNGLVKDLLPAGSVDASTRLIFANALYFKGAWTE 543
A L VDF TKA EV +EVN+W EK T GL++++LPAGSV +ST+L+ ANALYFK AW +
Sbjct: 121 AELRQVDFLTKANEVISEVNSWVEKNTYGLIREILPAGSVGSSTQLVLANALYFKAAWQQ 180
Query: 544 KFDASMTKDCDFHLLDGTS 600
FDAS+T DF+L+DG+S
Sbjct: 181 AFDASITMKRDFYLIDGSS 199
>pir||T06597 serpin homolog WZS3 - wheat gi|1885346|emb|CAA72274.1| serpin
[Triticum aestivum]
Length = 398
Score = 202 bits (514), Expect = 3e-51
Identities = 103/198 (52%), Positives = 137/198 (69%), Gaps = 1/198 (0%)
Frame = +1
Query: 10 DLRESIETQTDVSLTIAKLLFSK-HSKDKNAVFSPLSLHVVLSILAAGSEGPTLHQLLTF 186
D+R SI QT + +A + S S NA FSP+SLHV LS++ AG+ G T +QL
Sbjct: 8 DVRLSIAHQTRFAFRLASAISSNPESTVNNAAFSPVSLHVALSLITAGAGGATRNQLAAT 67
Query: 187 LRSNSTDHLNSFASQLVSVVLSDASSVGGPRLCFADGVWVEQSLTLNPSFKQLVTADYHA 366
L + L++ A Q+V VL+DAS++GGPR+ FA+GV+V+ SL L PSF++L Y A
Sbjct: 68 LGEGEVEGLHALAEQVVQFVLADASNIGGPRVAFANGVFVDASLQLKPSFQELAVCKYKA 127
Query: 367 ALASVDFQTKAVEVANEVNAWAEKETNGLVKDLLPAGSVDASTRLIFANALYFKGAWTEK 546
SVDFQTKA EV +VN+W EK T GL+KD+LPAGS+D +TRL+ NALYFKGAWT++
Sbjct: 128 EAQSVDFQTKAAEVTAQVNSWVEKVTTGLIKDILPAGSIDNTTRLVLGNALYFKGAWTDQ 187
Query: 547 FDASMTKDCDFHLLDGTS 600
FD T+ DF+LLDG+S
Sbjct: 188 FDPRATQSDDFYLLDGSS 205
>emb|CAB52709.1| serpin [Triticum aestivum]
Length = 398
Score = 201 bits (511), Expect = 6e-51
Identities = 106/198 (53%), Positives = 141/198 (70%), Gaps = 1/198 (0%)
Frame = +1
Query: 10 DLRESIETQTDVSLTIAKLLFSK-HSKDKNAVFSPLSLHVVLSILAAGSEGPTLHQLLTF 186
D+R SI QT +L +A + S S NAVFSP+SLHV LS+LAAG+ T QL+
Sbjct: 8 DVRLSIAHQTRFALRLASTISSNPKSAASNAVFSPVSLHVALSLLAAGAGSATRDQLVAT 67
Query: 187 LRSNSTDHLNSFASQLVSVVLSDASSVGGPRLCFADGVWVEQSLTLNPSFKQLVTADYHA 366
L + + L++ A Q+V VL+DASS GGP + FA+GV+V+ SL L PSF++L Y A
Sbjct: 68 LGTGEVEGLHALAEQVVQFVLADASSAGGPHVAFANGVFVDASLPLKPSFQELAVCKYKA 127
Query: 367 ALASVDFQTKAVEVANEVNAWAEKETNGLVKDLLPAGSVDASTRLIFANALYFKGAWTEK 546
SVDFQTKA EVA +VN+W EK T+G +KD+LP+GSVD +T+L+ ANALYFKGAWT++
Sbjct: 128 DTQSVDFQTKAAEVATQVNSWVEKVTSGRIKDILPSGSVDNTTKLVLANALYFKGAWTDQ 187
Query: 547 FDASMTKDCDFHLLDGTS 600
FD+S TK+ F+L DG+S
Sbjct: 188 FDSSGTKNDYFYLPDGSS 205
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.316 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,349,482
Number of Sequences: 1393205
Number of extensions: 12965431
Number of successful extensions: 107292
Number of sequences better than 10.0: 2391
Number of HSP's better than 10.0 without gapping: 66862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92537
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
