Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002437A_C02 KMC002437A_c02
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB21137.1| P0416D03.25 [Oryza sativa (japonica cultivar-gro... 145 4e-34
ref|NP_174492.1| unknown protein; protein id: At1g32130.1 [Arabi... 123 2e-27
ref|NP_193635.1| putative protein; protein id: At4g19000.1 [Arab... 58 8e-08
emb|CAA32910.1| DNA methyltransferase 1 [Mus musculus] 35 0.55
gb|AAC40061.1| DNA (cytosine-5)-methyltransferase [Mus musculus] 35 0.55
>dbj|BAB21137.1| P0416D03.25 [Oryza sativa (japonica cultivar-group)]
gi|13872875|dbj|BAB43982.1| P0434B04.3 [Oryza sativa
(japonica cultivar-group)]
Length = 451
Score = 145 bits (365), Expect = 4e-34
Identities = 69/94 (73%), Positives = 81/94 (85%)
Frame = -2
Query: 529 SRDSDLDLDLPQPRSGQSSSRQHASRPEATPMDFVIRPPSKVDPEEVRARAKPASHDQQR 350
SRD DLD D Q +SGQ +RQHASRPEA+P+DFVIRP SK+DPE++RARAK DQ+R
Sbjct: 358 SRDDDLDADFSQRKSGQGGARQHASRPEASPLDFVIRPQSKIDPEQIRARAKQVVQDQRR 417
Query: 349 MKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL 248
+KMNKKLQQL+APKK+ LQA+KLSVEGRGMIKYL
Sbjct: 418 LKMNKKLQQLKAPKKKNLQASKLSVEGRGMIKYL 451
>ref|NP_174492.1| unknown protein; protein id: At1g32130.1 [Arabidopsis thaliana]
gi|25403146|pir||F86445 unknown protein [imported] -
Arabidopsis thaliana
gi|10801371|gb|AAG23443.1|AC084165_9 unknown protein
[Arabidopsis thaliana]
Length = 404
Score = 123 bits (308), Expect = 2e-27
Identities = 64/100 (64%), Positives = 79/100 (79%), Gaps = 6/100 (6%)
Frame = -2
Query: 529 SRDSDLDLDLPQPR----SGQSS--SRQHASRPEATPMDFVIRPPSKVDPEEVRARAKPA 368
SRD D DL++ + + SGQSS RQ RPEATP+DF+IRP SK+DP+E+ ARAK
Sbjct: 305 SRDGDFDLEIRERKTGLTSGQSSRGDRQMTMRPEATPLDFLIRPQSKIDPDEIIARAKQV 364
Query: 367 SHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL 248
S DQ+R+KMNKKLQQL+ KK++LQATK+SVEGRGMIKYL
Sbjct: 365 SQDQRRVKMNKKLQQLKGTKKKRLQATKVSVEGRGMIKYL 404
>ref|NP_193635.1| putative protein; protein id: At4g19000.1 [Arabidopsis thaliana]
gi|7485421|pir||T05037 hypothetical protein F13C5.170 -
Arabidopsis thaliana gi|2832628|emb|CAA16757.1| putative
protein [Arabidopsis thaliana]
gi|7268694|emb|CAB78902.1| putative protein [Arabidopsis
thaliana]
Length = 406
Score = 57.8 bits (138), Expect = 8e-08
Identities = 38/94 (40%), Positives = 54/94 (57%)
Frame = -2
Query: 529 SRDSDLDLDLPQPRSGQSSSRQHASRPEATPMDFVIRPPSKVDPEEVRARAKPASHDQQR 350
+RD + D+DL + G + R A P MDF IRPPSKVD + +P S + +
Sbjct: 320 ARDFNTDIDLYE--LGTWTGRARAKIPTTMSMDFKIRPPSKVD---INQEEEPCS--KWQ 372
Query: 349 MKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL 248
M+ K +Q + +K +QA KLSV+GR M+KYL
Sbjct: 373 MEKRHKNKQQKNIRKGGMQALKLSVDGRTMLKYL 406
>emb|CAA32910.1| DNA methyltransferase 1 [Mus musculus]
Length = 1620
Score = 35.0 bits (79), Expect = 0.55
Identities = 24/87 (27%), Positives = 47/87 (53%)
Frame = -2
Query: 526 RDSDLDLDLPQPRSGQSSSRQHASRPEATPMDFVIRPPSKVDPEEVRARAKPASHDQQRM 347
R++ + L + G+ R +SRP + P D P +K P+EVRARA +S D +
Sbjct: 259 REARPETHLDEDEDGKKDKR--SSRPRSQPRD----PAAKRRPKEVRARA-GSSRDSEDR 311
Query: 346 KMNKKLQQLRAPKKRQLQATKLSVEGR 266
+++ ++ R +++L++ + V+ R
Sbjct: 312 DEDEREEKRRKTTRKKLESHTVPVQSR 338
>gb|AAC40061.1| DNA (cytosine-5)-methyltransferase [Mus musculus]
Length = 1502
Score = 35.0 bits (79), Expect = 0.55
Identities = 24/87 (27%), Positives = 47/87 (53%)
Frame = -2
Query: 526 RDSDLDLDLPQPRSGQSSSRQHASRPEATPMDFVIRPPSKVDPEEVRARAKPASHDQQRM 347
R++ + L + G+ R +SRP + P D P +K P+EVRARA +S D +
Sbjct: 141 REARPETHLDEDEDGKKDKR--SSRPRSQPRD----PAAKRRPKEVRARA-GSSRDSEDR 193
Query: 346 KMNKKLQQLRAPKKRQLQATKLSVEGR 266
+++ ++ R +++L++ + V+ R
Sbjct: 194 DEDEREEKRRKTTRKKLESHTVPVQSR 220
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,510,109
Number of Sequences: 1393205
Number of extensions: 10111264
Number of successful extensions: 25421
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 24378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25383
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
