Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002433A_C01 KMC002433A_c01
(707 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565777.1| expressed protein; protein id: At2g34040.1, sup... 181 7e-45
gb|AAF24538.2|AC007508_1 F1K23.1 [Arabidopsis thaliana] 139 3e-32
dbj|BAC42863.1| unknown protein [Arabidopsis thaliana] gi|289733... 139 3e-32
ref|NP_174198.1| hypothetical protein; protein id: At1g29030.1 [... 139 3e-32
pir||E86412 hypothetical protein F28N24.26 - Arabidopsis thalian... 91 2e-17
>ref|NP_565777.1| expressed protein; protein id: At2g34040.1, supported by cDNA:
13928. [Arabidopsis thaliana] gi|20196906|gb|AAB67622.2|
expressed protein [Arabidopsis thaliana]
gi|21553359|gb|AAM62452.1| unknown [Arabidopsis
thaliana] gi|25083323|gb|AAN72062.1| expressed protein
[Arabidopsis thaliana]
Length = 553
Score = 181 bits (460), Expect = 7e-45
Identities = 94/137 (68%), Positives = 109/137 (78%), Gaps = 4/137 (2%)
Frame = -1
Query: 704 HQSMADAKTDEEKKKIKTKKQNATTGLRTCNNILTMTKPLHAKVPSFIGDKRINLSWKEA 525
+++M+ AKTDEEK IKTK+QN TTGLRTCNNIL MTKPLHAKVP FIGD +NLSWKEA
Sbjct: 415 NKAMSAAKTDEEKASIKTKRQNTTTGLRTCNNILAMTKPLHAKVPPFIGDTNLNLSWKEA 474
Query: 524 IK-AAPTTQTAGAKRPATAANGS-NNIASKKGRGAGGLQNQLVNRALDGLS--GGGRGFA 357
K A TT T G KRPA + NGS NN+A+KKGRG+G +QNQLVN+A +G+S G GRG
Sbjct: 475 TKPLASTTTTIGGKRPANSNNGSGNNVAAKKGRGSGTMQNQLVNKAFEGISSYGAGRGGN 534
Query: 356 RGRGRGWGGRGRGRGRG 306
RG GR GGRGRG+GRG
Sbjct: 535 RGWGRRGGGRGRGQGRG 551
>gb|AAF24538.2|AC007508_1 F1K23.1 [Arabidopsis thaliana]
Length = 347
Score = 139 bits (351), Expect = 3e-32
Identities = 80/142 (56%), Positives = 94/142 (65%), Gaps = 8/142 (5%)
Frame = -1
Query: 701 QSMADAKTDEEKKKIKTKKQNATTGLRTCNNILTMTKPLHAKVPSFIGDKRINLSWKEAI 522
++M+ AKTDEEK +KTKKQ+ TTGLRTCNNIL MTK LHAK PSFIG+ + LSWKE
Sbjct: 207 KAMSTAKTDEEKSIVKTKKQSTTTGLRTCNNILAMTKGLHAKAPSFIGNTSVTLSWKEPT 266
Query: 521 KAAP--TTQTAGAKRPATAANGSNNIASKKGRGAGGLQNQLVNRALDGLS-GGGRGFARG 351
K + T G KRPA A NN+ +KK R Q Q+VN+ +G+S GGGRG RG
Sbjct: 267 KVTKPLASTTTGGKRPANGA--GNNVGAKKARVQN--QQQVVNKRSEGISHGGGRGSHRG 322
Query: 350 RGRGWG-----GRGRGRGRGFR 300
RGRG G G G GRGRG R
Sbjct: 323 RGRGQGQGRHSGGGGGRGRGRR 344
>dbj|BAC42863.1| unknown protein [Arabidopsis thaliana] gi|28973375|gb|AAO64012.1|
unknown protein [Arabidopsis thaliana]
Length = 556
Score = 139 bits (351), Expect = 3e-32
Identities = 80/142 (56%), Positives = 94/142 (65%), Gaps = 8/142 (5%)
Frame = -1
Query: 701 QSMADAKTDEEKKKIKTKKQNATTGLRTCNNILTMTKPLHAKVPSFIGDKRINLSWKEAI 522
++M+ AKTDEEK +KTKKQ+ TTGLRTCNNIL MTK LHAK PSFIG+ + LSWKE
Sbjct: 416 KAMSTAKTDEEKSIVKTKKQSTTTGLRTCNNILAMTKGLHAKAPSFIGNTSVTLSWKEPT 475
Query: 521 KAAP--TTQTAGAKRPATAANGSNNIASKKGRGAGGLQNQLVNRALDGLS-GGGRGFARG 351
K + T G KRPA A NN+ +KK R Q Q+VN+ +G+S GGGRG RG
Sbjct: 476 KVTKPLASTTTGGKRPANGA--GNNVGAKKARVQN--QQQVVNKRSEGISHGGGRGSHRG 531
Query: 350 RGRGWG-----GRGRGRGRGFR 300
RGRG G G G GRGRG R
Sbjct: 532 RGRGQGQGRHSGGGGGRGRGRR 553
>ref|NP_174198.1| hypothetical protein; protein id: At1g29030.1 [Arabidopsis
thaliana]
Length = 531
Score = 139 bits (351), Expect = 3e-32
Identities = 80/142 (56%), Positives = 94/142 (65%), Gaps = 8/142 (5%)
Frame = -1
Query: 701 QSMADAKTDEEKKKIKTKKQNATTGLRTCNNILTMTKPLHAKVPSFIGDKRINLSWKEAI 522
++M+ AKTDEEK +KTKKQ+ TTGLRTCNNIL MTK LHAK PSFIG+ + LSWKE
Sbjct: 391 KAMSTAKTDEEKSIVKTKKQSTTTGLRTCNNILAMTKGLHAKAPSFIGNTSVTLSWKEPT 450
Query: 521 KAAP--TTQTAGAKRPATAANGSNNIASKKGRGAGGLQNQLVNRALDGLS-GGGRGFARG 351
K + T G KRPA A NN+ +KK R Q Q+VN+ +G+S GGGRG RG
Sbjct: 451 KVTKPLASTTTGGKRPANGA--GNNVGAKKARVQN--QQQVVNKRSEGISHGGGRGSHRG 506
Query: 350 RGRGWG-----GRGRGRGRGFR 300
RGRG G G G GRGRG R
Sbjct: 507 RGRGQGQGRHSGGGGGRGRGRR 528
>pir||E86412 hypothetical protein F28N24.26 - Arabidopsis thaliana
gi|9502430|gb|AAF88129.1|AC021043_22 Hypothetical
protein [Arabidopsis thaliana]
Length = 533
Score = 90.5 bits (223), Expect = 2e-17
Identities = 70/171 (40%), Positives = 86/171 (49%), Gaps = 37/171 (21%)
Frame = -1
Query: 701 QSMADAKTDEEKKKIKTKKQNATTGLRTCNNILTMTKPL--------------------- 585
++M+ AKTDEEK +KTKKQ+ TTGLRTCNNIL MTK
Sbjct: 364 KAMSTAKTDEEKSIVKTKKQSTTTGLRTCNNILAMTKVTCIYLFNKSRVLANMTVWYVTG 423
Query: 584 HAKVPSFIGDKRINLSWKEAIKAAPTT----------QTAGAKRPATAANGSNNIASKKG 435
A +FI K S+ E + T ++ KRPA A NN+ +KK
Sbjct: 424 IACKSAFIYRKHQCYSFLERTHESDETVSLYNDWVQAKSTLGKRPANGA--GNNVGAKKA 481
Query: 434 RGAGGLQNQLVNRALDGLS-GGGRGFARGRGRGWG-----GRGRGRGRGFR 300
R Q Q+VN+ +G+S GGGRG RGRGRG G G G GRGRG R
Sbjct: 482 RVQN--QQQVVNKRSEGISHGGGRGSHRGRGRGQGQGRHSGGGGGRGRGRR 530
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 615,823,719
Number of Sequences: 1393205
Number of extensions: 15164232
Number of successful extensions: 153696
Number of sequences better than 10.0: 1865
Number of HSP's better than 10.0 without gapping: 76135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122789
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
