Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002421A_C01 KMC002421A_c01
(277 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A86399 protein F17L21.12 [imported] - Arabidopsis thaliana ... 73 6e-13
ref|NP_564277.1| unknown protein; protein id: At1g27330.1 [Arabi... 73 7e-13
dbj|BAC55602.1| OJ1127_E01.1 [Oryza sativa (japonica cultivar-gr... 61 5e-09
gb|EAA16367.1| Arabidopsis thaliana F17L21.12-related [Plasmodiu... 51 5e-06
ref|NP_703173.1| hypothetical protein [Plasmodium falciparum 3D7... 45 3e-04
>pir||A86399 protein F17L21.12 [imported] - Arabidopsis thaliana
gi|9802529|gb|AAF99731.1|AC004557_10 F17L21.12
[Arabidopsis thaliana]
Length = 77
Score = 73.2 bits (178), Expect(2) = 6e-13
Identities = 34/36 (94%), Positives = 35/36 (96%)
Frame = -2
Query: 276 FVPETTAKKGKDYPVGPVLLGFFVFVVIGSSLFQII 169
FVPETT KKGKDYPVGP+LLGFFVFVVIGSSLFQII
Sbjct: 33 FVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQII 68
Score = 20.8 bits (42), Expect(2) = 6e-13
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 179 FR*SRTATSGGLA 141
F+ RTATSGG+A
Sbjct: 65 FQIIRTATSGGMA 77
>ref|NP_564277.1| unknown protein; protein id: At1g27330.1 [Arabidopsis thaliana]
gi|18396300|ref|NP_564279.1| unknown protein; protein
id: At1g27350.1 [Arabidopsis thaliana]
gi|27754570|gb|AAO22732.1| unknown protein [Arabidopsis
thaliana] gi|28393875|gb|AAO42345.1| unknown protein
[Arabidopsis thaliana] gi|28416573|gb|AAO42817.1|
At1g27330 [Arabidopsis thaliana]
Length = 68
Score = 73.2 bits (178), Expect(2) = 7e-13
Identities = 34/36 (94%), Positives = 35/36 (96%)
Frame = -2
Query: 276 FVPETTAKKGKDYPVGPVLLGFFVFVVIGSSLFQII 169
FVPETT KKGKDYPVGP+LLGFFVFVVIGSSLFQII
Sbjct: 24 FVPETTTKKGKDYPVGPILLGFFVFVVIGSSLFQII 59
Score = 20.8 bits (42), Expect(2) = 7e-13
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 179 FR*SRTATSGGLA 141
F+ RTATSGG+A
Sbjct: 56 FQIIRTATSGGMA 68
>dbj|BAC55602.1| OJ1127_E01.1 [Oryza sativa (japonica cultivar-group)]
Length = 67
Score = 60.8 bits (146), Expect = 5e-09
Identities = 29/35 (82%), Positives = 32/35 (90%)
Frame = -2
Query: 273 VPETTAKKGKDYPVGPVLLGFFVFVVIGSSLFQII 169
VPET KKG DYPVGP++LGFFVFVV+GSSLFQII
Sbjct: 25 VPETV-KKGNDYPVGPIVLGFFVFVVVGSSLFQII 58
>gb|EAA16367.1| Arabidopsis thaliana F17L21.12-related [Plasmodium yoelii yoelii]
Length = 67
Score = 50.8 bits (120), Expect = 5e-06
Identities = 22/35 (62%), Positives = 28/35 (79%)
Frame = -2
Query: 273 VPETTAKKGKDYPVGPVLLGFFVFVVIGSSLFQII 169
VP + AKKGK Y VGP+LLG F+F+VIGS + QI+
Sbjct: 24 VPTSIAKKGKKYTVGPILLGIFIFIVIGSVVIQIL 58
>ref|NP_703173.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503434|gb|AAN37617.1|AE001423_1 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 67
Score = 45.1 bits (105), Expect = 3e-04
Identities = 19/36 (52%), Positives = 28/36 (77%)
Frame = -2
Query: 273 VPETTAKKGKDYPVGPVLLGFFVFVVIGSSLFQIIT 166
VP + KKG+ +PVGP+LL F+FVVIGS + Q+++
Sbjct: 24 VPPSLVKKGRKHPVGPILLVVFIFVVIGSVIVQMLS 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 230,615,626
Number of Sequences: 1393205
Number of extensions: 4435727
Number of successful extensions: 13888
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 13582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13885
length of database: 448,689,247
effective HSP length: 67
effective length of database: 355,344,512
effective search space used: 8528268288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
