Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002417A_C02 KMC002417A_c02
(1198 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40675.1| OSJNBb0118P14.13 [Oryza sativa (japonica cultiva... 408 e-113
ref|NP_564390.1| expressed protein; protein id: At1g32220.1, sup... 407 e-112
ref|NP_568236.1| putative protein; protein id: At5g10730.1, supp... 190 3e-47
ref|NP_568323.1| putative protein; protein id: At5g15910.1, supp... 187 3e-46
gb|AAM64324.1| unknown [Arabidopsis thaliana] 187 3e-46
>emb|CAD40675.1| OSJNBb0118P14.13 [Oryza sativa (japonica cultivar-group)]
Length = 307
Score = 408 bits (1049), Expect = e-113
Identities = 212/296 (71%), Positives = 242/296 (81%), Gaps = 2/296 (0%)
Frame = -2
Query: 1146 TAVSAPPTPRAFSVRTPFYKSPPTLHFKS--HRFAVSCSFAGAGVSDDPRLTPIDVAADV 973
T S PP A +V + + P ++ R +FA + + +D TPIDV AD
Sbjct: 18 TYPSLPPRRCAPAVASAALRVAPATASRAPFSRLVTKRNFAASDIREDYS-TPIDVVAD- 75
Query: 972 KSERIVVLGGSGFVGSAICKAAVSRGIEVISLNRSGRPTYPGTWVDQVTWIPGDVFYVNW 793
IVVLGGSGFVGSAICKAAVS+GIEV+SL+RSGRP+Y WVDQVTW+ GDVFY W
Sbjct: 76 ----IVVLGGSGFVGSAICKAAVSKGIEVVSLSRSGRPSYSDPWVDQVTWLAGDVFYARW 131
Query: 792 DEVLPGATAVVSTLGGFGSEEQMRKINGEANVVAVNAAKEYGIPKFILISVHDYNLPSFL 613
DEVL GATAVVSTLGGFG+EEQM++INGEANV AV+AAKE+GIPKFILISVHDYNLPSFL
Sbjct: 132 DEVLVGATAVVSTLGGFGNEEQMKRINGEANVTAVDAAKEFGIPKFILISVHDYNLPSFL 191
Query: 612 LSSGYFTGKRKAESEVLSKYPGSGIVLRPGFIYGKRRVDGFELPLDLVGEPAEKILKAVE 433
L+SGYFTGKRKAESEVLSKYP SG+VLRPGFIYGKR+VDGFE+PLD+VG+P EK+L +VE
Sbjct: 192 LNSGYFTGKRKAESEVLSKYPTSGVVLRPGFIYGKRKVDGFEIPLDVVGQPLEKLLSSVE 251
Query: 432 NFTKPLSSLPASDLLLAPPVSVDDVALAAINGLKDDDFFGIFTIDQIKEAAENVRV 265
NFTKPLSSLPASDLLLAPPVSVDDVA A ING+ DD FFG+FTI+QIKEAA VRV
Sbjct: 252 NFTKPLSSLPASDLLLAPPVSVDDVAYAVINGVIDDSFFGVFTIEQIKEAAAKVRV 307
>ref|NP_564390.1| expressed protein; protein id: At1g32220.1, supported by cDNA: 3464.
[Arabidopsis thaliana] gi|25403150|pir||G86446 unknown
protein [imported] - Arabidopsis thaliana
gi|10801374|gb|AAG23446.1|AC084165_12 unknown protein
[Arabidopsis thaliana] gi|21592971|gb|AAM64920.1| unknown
[Arabidopsis thaliana] gi|22530968|gb|AAM96988.1|
expressed protein [Arabidopsis thaliana]
gi|23198380|gb|AAN15717.1| expressed protein [Arabidopsis
thaliana]
Length = 296
Score = 407 bits (1046), Expect = e-112
Identities = 204/304 (67%), Positives = 248/304 (81%), Gaps = 8/304 (2%)
Frame = -2
Query: 1155 LSLTAVSA-PPT-------PRAFSVRTPFYKSPPTLHFKSHRFAVSCSFAGAGVSDDPRL 1000
LS +A+SA PPT PR+FS R FKS V C++A AG+S
Sbjct: 5 LSFSAISAHPPTFSGASFRPRSFSPRL----------FKS---CVKCTYAEAGLSSASWS 51
Query: 999 TPIDVAADVKSERIVVLGGSGFVGSAICKAAVSRGIEVISLNRSGRPTYPGTWVDQVTWI 820
PID+ ADVKSER+VVLGG+GFVGSAICKAA+S GIEV+S++RSGRP + +W+DQVTW+
Sbjct: 52 APIDIVADVKSERVVVLGGNGFVGSAICKAAISNGIEVVSVSRSGRPNFEDSWLDQVTWV 111
Query: 819 PGDVFYVNWDEVLPGATAVVSTLGGFGSEEQMRKINGEANVVAVNAAKEYGIPKFILISV 640
GDVFY+NWDEVL GATAVVST+GGFG+EEQM++INGEANV AVNAAK++G+PKF+LI+V
Sbjct: 112 TGDVFYLNWDEVLLGATAVVSTIGGFGNEEQMKRINGEANVTAVNAAKDFGVPKFVLITV 171
Query: 639 HDYNLPSFLLSSGYFTGKRKAESEVLSKYPGSGIVLRPGFIYGKRRVDGFELPLDLVGEP 460
HDYNLP F+LS+GYFTGKR AE+E+LSKYP SG+VLRPGFIYGKR+V+G E+PLDLVGEP
Sbjct: 172 HDYNLPPFILSNGYFTGKRNAEAELLSKYPTSGVVLRPGFIYGKRKVNGIEVPLDLVGEP 231
Query: 459 AEKILKAVENFTKPLSSLPASDLLLAPPVSVDDVALAAINGLKDDDFFGIFTIDQIKEAA 280
+KI + E F +PL SLPASDL+LAPPV+VDD+ALA IN +KDDDFFGIFTI+QIKEAA
Sbjct: 232 LDKIYDSAERFIRPLRSLPASDLILAPPVNVDDLALAVINAVKDDDFFGIFTIEQIKEAA 291
Query: 279 ENVR 268
+R
Sbjct: 292 AKMR 295
>ref|NP_568236.1| putative protein; protein id: At5g10730.1, supported by cDNA:
10217., supported by cDNA: gi_13926272, supported by
cDNA: gi_16323237, supported by cDNA: gi_19698948
[Arabidopsis thaliana]
gi|13926273|gb|AAK49607.1|AF372891_1 AT5g10730/MAJ23_90
[Arabidopsis thaliana] gi|16323238|gb|AAL15353.1|
AT5g10730/MAJ23_90 [Arabidopsis thaliana]
gi|19698949|gb|AAL91210.1| putative protein [Arabidopsis
thaliana] gi|21387195|gb|AAM48001.1| unknown protein
[Arabidopsis thaliana] gi|21536539|gb|AAM60871.1|
unknown [Arabidopsis thaliana]
Length = 287
Score = 190 bits (483), Expect = 3e-47
Identities = 98/218 (44%), Positives = 141/218 (63%), Gaps = 1/218 (0%)
Frame = -2
Query: 969 SERIVVLGGSGFVGSAICKAAVSRGIEVISLNRSGRPTYPGTWVDQVTWIPGDVFYVNW- 793
+E+++VLGG+GFVGS +CK A+ RG+ V SL+RSGR + +W +VTW G++ +
Sbjct: 56 TEKLLVLGGNGFVGSHVCKEALDRGLSVSSLSRSGRSSLQESWASRVTWHQGNLLSSDLL 115
Query: 792 DEVLPGATAVVSTLGGFGSEEQMRKINGEANVVAVNAAKEYGIPKFILISVHDYNLPSFL 613
+ L G T+V+S +GGFGS M KING AN+ A+ AA E G+ +F+ IS D+ L ++L
Sbjct: 116 KDALEGVTSVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLANYL 175
Query: 612 LSSGYFTGKRKAESEVLSKYPGSGIVLRPGFIYGKRRVDGFELPLDLVGEPAEKILKAVE 433
L GY+ GKR AE+E+L+++ GI+LRPGFIYG R V ++PL + G P E +L+
Sbjct: 176 L-RGYYEGKRAAETELLTRFAYGGIILRPGFIYGTRSVGSMKIPLGVFGSPMEMVLQQ-- 232
Query: 432 NFTKPLSSLPASDLLLAPPVSVDDVALAAINGLKDDDF 319
KPL+ LP L PPV+V+ VA A+ D F
Sbjct: 233 --AKPLNQLPLVGPLFTPPVNVESVAKVAVRAATDPVF 268
>ref|NP_568323.1| putative protein; protein id: At5g15910.1, supported by cDNA:
22994., supported by cDNA: gi_15292960, supported by
cDNA: gi_21280840 [Arabidopsis thaliana]
gi|15292961|gb|AAK93591.1| unknown protein [Arabidopsis
thaliana] gi|21280841|gb|AAM44918.1| unknown protein
[Arabidopsis thaliana]
Length = 269
Score = 187 bits (475), Expect = 3e-46
Identities = 100/219 (45%), Positives = 139/219 (62%), Gaps = 1/219 (0%)
Frame = -2
Query: 972 KSERIVVLGGSGFVGSAICKAAVSRGIEVISLNRSGRPTYPGTWVDQVTWIPGDVFYVN- 796
+ +I+VLGG+G+VGS ICK A+ +G V SL+RSGR + +WVD VTW GD+ +
Sbjct: 40 RDNKILVLGGNGYVGSHICKEALRQGFSVSSLSRSGRSSLHDSWVDDVTWHQGDLLSPDS 99
Query: 795 WDEVLPGATAVVSTLGGFGSEEQMRKINGEANVVAVNAAKEYGIPKFILISVHDYNLPSF 616
L G T+V+S +GGFGS QM +ING AN+ AV AA E G+ +F+ IS D+ + +
Sbjct: 100 LKPALEGITSVISCVGGFGSNSQMVRINGTANINAVKAAAEQGVKRFVYISAADFGVINN 159
Query: 615 LLSSGYFTGKRKAESEVLSKYPGSGIVLRPGFIYGKRRVDGFELPLDLVGEPAEKILKAV 436
L+ GYF GKR E+E+L K+ G VLRPGFI+G R+V +LPL L+G P E +LK +
Sbjct: 160 LIR-GYFEGKRATEAEILDKFGNRGSVLRPGFIHGTRQVGSIKLPLSLIGAPLEMVLKLL 218
Query: 435 ENFTKPLSSLPASDLLLAPPVSVDDVALAAINGLKDDDF 319
K ++ +P LL PPV+V VA A+ D +F
Sbjct: 219 ---PKEVTKIPVIGPLLIPPVNVKSVAATAVKAAVDPEF 254
>gb|AAM64324.1| unknown [Arabidopsis thaliana]
Length = 251
Score = 187 bits (475), Expect = 3e-46
Identities = 100/219 (45%), Positives = 139/219 (62%), Gaps = 1/219 (0%)
Frame = -2
Query: 972 KSERIVVLGGSGFVGSAICKAAVSRGIEVISLNRSGRPTYPGTWVDQVTWIPGDVFYVN- 796
+ +I+VLGG+G+VGS ICK A+ +G V SL+RSGR + +WVD VTW GD+ +
Sbjct: 22 RDNKILVLGGNGYVGSHICKEALRQGFSVSSLSRSGRSSLHDSWVDDVTWHQGDLLSPDS 81
Query: 795 WDEVLPGATAVVSTLGGFGSEEQMRKINGEANVVAVNAAKEYGIPKFILISVHDYNLPSF 616
L G T+V+S +GGFGS QM +ING AN+ AV AA E G+ +F+ IS D+ + +
Sbjct: 82 LKPALEGITSVISCVGGFGSNSQMVRINGTANINAVKAAAEQGVKRFVYISAADFGVINN 141
Query: 615 LLSSGYFTGKRKAESEVLSKYPGSGIVLRPGFIYGKRRVDGFELPLDLVGEPAEKILKAV 436
L+ GYF GKR E+E+L K+ G VLRPGFI+G R+V +LPL L+G P E +LK +
Sbjct: 142 LIR-GYFEGKRATEAEILDKFGNRGSVLRPGFIHGTRQVGSIKLPLSLIGAPLEMVLKLL 200
Query: 435 ENFTKPLSSLPASDLLLAPPVSVDDVALAAINGLKDDDF 319
K ++ +P LL PPV+V VA A+ D +F
Sbjct: 201 ---PKEVTKIPVIGPLLIPPVNVKSVAATAVKAAVDPEF 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,033,469,847
Number of Sequences: 1393205
Number of extensions: 23555243
Number of successful extensions: 69443
Number of sequences better than 10.0: 216
Number of HSP's better than 10.0 without gapping: 64054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69310
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 74949043806
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
