Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002416A_C01 KMC002416A_c01
(417 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_569139.1| putative coat protein [tobacco vein-clearing vi... 31 3.2
ref|NP_579714.1| hypothetical protein [Pyrococcus furiosus DSM 3... 30 5.4
ref|NP_691866.1| hypothetical protein [Oceanobacillus iheyensis ... 30 7.0
gb|AAG35356.1|AF297180_1 Na/Pi cotransporter NaPi-IIb2 [Danio re... 30 9.2
gb|AAC05758.1| NADH dehydrogenase subunit 1 [Dalbulus gelbus] 30 9.2
>ref|NP_569139.1| putative coat protein [tobacco vein-clearing virus]
gi|6425073|gb|AAF08287.1|AF190123_1 putative coat
protein [tobacco vein-clearing virus]
Length = 579
Score = 31.2 bits (69), Expect = 3.2
Identities = 22/68 (32%), Positives = 30/68 (43%), Gaps = 6/68 (8%)
Frame = -1
Query: 417 DKYHANDSTKGKKKGHSDVISKKPIKKTQVKLKSQERWLPTRKHMGEC------QTSHMA 256
DKY+ TK KK S KKP K+ VK ++ +K + EC + H+A
Sbjct: 459 DKYNKKWKTKKYKKHRSKYKYKKPRKRYYVKNYQAKKPFRPKKKLTECTCYNCGKLGHIA 518
Query: 255 NQFWNPKN 232
PKN
Sbjct: 519 KDCKAPKN 526
>ref|NP_579714.1| hypothetical protein [Pyrococcus furiosus DSM 3638]
gi|18894191|gb|AAL82109.1| hypothetical protein
[Pyrococcus furiosus DSM 3638]
Length = 167
Score = 30.4 bits (67), Expect = 5.4
Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -1
Query: 384 KKKGHSDVISKKPIKKTQVKLKSQERWLPTRKHMGECQTSHMANQFW--NPKNDIELP 217
K+KG + I K K K+ +W TRK TS N+ W N +N + P
Sbjct: 91 KEKGWNVEILKDISSGLNEKRKNSSKWWQTRKCQSHHHTSRQTNKIWIQNTQNTLSSP 148
>ref|NP_691866.1| hypothetical protein [Oceanobacillus iheyensis HTE831]
gi|22776626|dbj|BAC12901.1| hypothetical conserved
protein [Oceanobacillus iheyensis HTE831]
Length = 261
Score = 30.0 bits (66), Expect = 7.0
Identities = 14/48 (29%), Positives = 24/48 (49%)
Frame = +2
Query: 260 MWDVWHSPMCFLVGSHLS*DFNLTWVFLIGFFEITSL*PFFFPLVESL 403
+W WH+P+ F G F +F+IG + + FF+ L ++L
Sbjct: 165 LWGGWHTPLWFATGYTGIHLFKYILLFMIGILSFSIIMAFFYNLNKNL 212
>gb|AAG35356.1|AF297180_1 Na/Pi cotransporter NaPi-IIb2 [Danio rerio]
Length = 632
Score = 29.6 bits (65), Expect = 9.2
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +1
Query: 199 GLSVCGWQLNVIFGIPELVSHVGCLAFSHVLSGR*PSFL 315
GLS+ GWQ+ V G+P LV + + +V+ R P FL
Sbjct: 517 GLSIAGWQVLVGIGVPVLVLAIFVIVV-NVMQKRCPRFL 554
>gb|AAC05758.1| NADH dehydrogenase subunit 1 [Dalbulus gelbus]
Length = 310
Score = 29.6 bits (65), Expect = 9.2
Identities = 20/67 (29%), Positives = 29/67 (42%), Gaps = 1/67 (1%)
Frame = +1
Query: 193 VDGLSVCGWQLNVIFGIPELVSHVG-CLAFSHVLSGR*PSFLRFQLDLGFLDWFL*NHIT 369
V GL VCGW N I+ + + V +++ LS F F+D++ H
Sbjct: 113 VYGLMVCGWSSNSIYSMLGCIRSVSQAISYEVSLSMILLGFFLLIDSYSFMDYYFYQHFV 172
Query: 370 MTLFLSL 390
FLSL
Sbjct: 173 WFSFLSL 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 336,661,800
Number of Sequences: 1393205
Number of extensions: 6808950
Number of successful extensions: 16502
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16500
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
