Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002409A_C02 KMC002409A_c02
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567143.1| putative protein; protein id: At3g63210.1, supp... 72 4e-12
gb|AAK92226.1| senescence-associated protein SAG102 [Arabidopsis... 72 4e-12
gb|AAM65522.1| unknown [Arabidopsis thaliana] 72 4e-12
pir||T48110 hypothetical protein F16M2.60 - Arabidopsis thaliana... 72 4e-12
ref|NP_188894.2| unknown protein; protein id: At3g22550.1, suppo... 63 3e-09
>ref|NP_567143.1| putative protein; protein id: At3g63210.1, supported by cDNA:
40080., supported by cDNA: gi_17473856, supported by
cDNA: gi_20148464 [Arabidopsis thaliana]
gi|17473857|gb|AAL38351.1| putative protein [Arabidopsis
thaliana] gi|20148465|gb|AAM10123.1| putative protein
[Arabidopsis thaliana]
Length = 263
Score = 72.4 bits (176), Expect = 4e-12
Identities = 31/44 (70%), Positives = 37/44 (83%)
Frame = -2
Query: 516 SESFLSNCFYCKKNLGQGKDIYMYRGERAFCSHECRYQGMLLEE 385
+ESFLS CF CKKNL Q +DIY+YRGE+ FCS ECRYQ MLL++
Sbjct: 217 TESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260
>gb|AAK92226.1| senescence-associated protein SAG102 [Arabidopsis thaliana]
Length = 263
Score = 72.4 bits (176), Expect = 4e-12
Identities = 31/44 (70%), Positives = 37/44 (83%)
Frame = -2
Query: 516 SESFLSNCFYCKKNLGQGKDIYMYRGERAFCSHECRYQGMLLEE 385
+ESFLS CF CKKNL Q +DIY+YRGE+ FCS ECRYQ MLL++
Sbjct: 217 TESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 260
>gb|AAM65522.1| unknown [Arabidopsis thaliana]
Length = 244
Score = 72.4 bits (176), Expect = 4e-12
Identities = 31/44 (70%), Positives = 37/44 (83%)
Frame = -2
Query: 516 SESFLSNCFYCKKNLGQGKDIYMYRGERAFCSHECRYQGMLLEE 385
+ESFLS CF CKKNL Q +DIY+YRGE+ FCS ECRYQ MLL++
Sbjct: 198 TESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 241
>pir||T48110 hypothetical protein F16M2.60 - Arabidopsis thaliana
gi|7523403|emb|CAB86422.1| putative protein [Arabidopsis
thaliana]
Length = 244
Score = 72.4 bits (176), Expect = 4e-12
Identities = 31/44 (70%), Positives = 37/44 (83%)
Frame = -2
Query: 516 SESFLSNCFYCKKNLGQGKDIYMYRGERAFCSHECRYQGMLLEE 385
+ESFLS CF CKKNL Q +DIY+YRGE+ FCS ECRYQ MLL++
Sbjct: 198 TESFLSRCFTCKKNLDQKQDIYIYRGEKGFCSSECRYQEMLLDQ 241
>ref|NP_188894.2| unknown protein; protein id: At3g22550.1, supported by cDNA:
gi_20466495 [Arabidopsis thaliana]
gi|20466496|gb|AAM20565.1| unknown protein [Arabidopsis
thaliana] gi|22136394|gb|AAM91275.1| unknown protein
[Arabidopsis thaliana]
Length = 267
Score = 62.8 bits (151), Expect = 3e-09
Identities = 28/49 (57%), Positives = 35/49 (71%)
Frame = -2
Query: 531 TSYYPSESFLSNCFYCKKNLGQGKDIYMYRGERAFCSHECRYQGMLLEE 385
+ Y P +SFLS C CKK+LG DI+MYRG+RAFCS ECR M++ E
Sbjct: 214 SDYSPPDSFLSCCCNCKKSLGPRDDIFMYRGDRAFCSSECRSIEMMMSE 262
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,238,310
Number of Sequences: 1393205
Number of extensions: 10912775
Number of successful extensions: 27765
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 26733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27740
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
