Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002402A_C01 KMC002402A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC21424.1| 12-oxophytodienoate reductase 3 [Lycopersicon es... 225 3e-58
gb|AAF67635.1|AF218257_1 12-oxo-phytodienoate reductase [Arabido... 203 1e-51
gb|AAD38925.1|AF132212_1 OPDA-reductase homolog [Arabidopsis tha... 203 1e-51
ref|NP_178662.1| 12-oxophytodienoate reductase (OPR3)(DDE1); pro... 203 1e-51
gb|AAG15379.1|AF293653_1 12-oxo-phytodienoate reductase [Arabido... 203 1e-51
>emb|CAC21424.1| 12-oxophytodienoate reductase 3 [Lycopersicon esculentum]
Length = 396
Score = 225 bits (574), Expect = 3e-58
Identities = 112/147 (76%), Positives = 126/147 (85%)
Frame = -2
Query: 612 DPLRLGLAVVERLNNLQKRLGRKLSYLHVTQPRYTAYGPTESGRPGSEEEETQLMRNLRK 433
+PL LGLAVVERLN +Q G KL+YLHVTQPRY AYG TE+GR GSEEEE +LMR LR
Sbjct: 251 NPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRN 310
Query: 432 AHQGTFMCSGGFTRKLGMEAVAQGDADLVSYGRLFISNPDLVLRFKLNAPLTKYNRKTFY 253
A+QGTF+CSGG+TR+LG+EAVAQGDADLVSYGRLFISNPDLV+R KLNAPL KYNRKTFY
Sbjct: 311 AYQGTFICSGGYTRELGIEAVAQGDADLVSYGRLFISNPDLVMRIKLNAPLNKYNRKTFY 370
Query: 252 TQDPVKGYTDYPFLNKGDMSKEPRASL 172
TQDPV GYTDYPFL +G+ S P + L
Sbjct: 371 TQDPVVGYTDYPFL-QGNGSNGPLSRL 396
>gb|AAF67635.1|AF218257_1 12-oxo-phytodienoate reductase [Arabidopsis thaliana]
Length = 391
Score = 203 bits (517), Expect = 1e-51
Identities = 99/134 (73%), Positives = 114/134 (84%)
Frame = -2
Query: 612 DPLRLGLAVVERLNNLQKRLGRKLSYLHVTQPRYTAYGPTESGRPGSEEEETQLMRNLRK 433
+PL LGLAVV+ LN LQ G KL+YLHVTQPRY AYG TESGR GS+EEE +LM++LR
Sbjct: 252 NPLSLGLAVVDMLNKLQDVNGLKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRM 311
Query: 432 AHQGTFMCSGGFTRKLGMEAVAQGDADLVSYGRLFISNPDLVLRFKLNAPLTKYNRKTFY 253
A++GTFM SGGF ++LGM+AV QGDADLVSYGRLFI+NPDLV RFK++ L KYNRKTFY
Sbjct: 312 AYKGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGKLNKYNRKTFY 371
Query: 252 TQDPVKGYTDYPFL 211
TQDPV GYTDYPFL
Sbjct: 372 TQDPVVGYTDYPFL 385
>gb|AAD38925.1|AF132212_1 OPDA-reductase homolog [Arabidopsis thaliana]
Length = 391
Score = 203 bits (517), Expect = 1e-51
Identities = 99/134 (73%), Positives = 114/134 (84%)
Frame = -2
Query: 612 DPLRLGLAVVERLNNLQKRLGRKLSYLHVTQPRYTAYGPTESGRPGSEEEETQLMRNLRK 433
+PL LGLAVV+ LN LQ G KL+YLHVTQPRY AYG TESGR GS+EEE +LM++LR
Sbjct: 252 NPLSLGLAVVDMLNKLQDVNGLKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRM 311
Query: 432 AHQGTFMCSGGFTRKLGMEAVAQGDADLVSYGRLFISNPDLVLRFKLNAPLTKYNRKTFY 253
A++GTFM SGGF ++LGM+AV QGDADLVSYGRLFI+NPDLV RFK++ L KYNRKTFY
Sbjct: 312 AYKGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFY 371
Query: 252 TQDPVKGYTDYPFL 211
TQDPV GYTDYPFL
Sbjct: 372 TQDPVVGYTDYPFL 385
>ref|NP_178662.1| 12-oxophytodienoate reductase (OPR3)(DDE1); protein id:
At2g06050.1, supported by cDNA: gi_10242313, supported
by cDNA: gi_13877646, supported by cDNA: gi_15294261,
supported by cDNA: gi_20453288, supported by cDNA:
gi_5059114 [Arabidopsis thaliana]
gi|25325952|pir||F84474
12-oxophytodienoate-10,11-reductase [imported] -
Arabidopsis thaliana gi|4388726|gb|AAD19764.1|
12-oxophytodienoate-10,11-reductase [Arabidopsis
thaliana] gi|13877647|gb|AAK43901.1|AF370582_1
12-oxophytodienoate-10,11-reductase [Arabidopsis
thaliana] gi|15294262|gb|AAK95308.1|AF410322_1
At2g06050/F5K7.19 [Arabidopsis thaliana]
gi|20453289|gb|AAM19883.1| At2g06050/F5K7.19
[Arabidopsis thaliana]
Length = 391
Score = 203 bits (517), Expect = 1e-51
Identities = 100/134 (74%), Positives = 112/134 (82%)
Frame = -2
Query: 612 DPLRLGLAVVERLNNLQKRLGRKLSYLHVTQPRYTAYGPTESGRPGSEEEETQLMRNLRK 433
DPL LGLAVV LN LQ G KL+YLHVTQPRY AYG TESGR GS+EEE +LM++LR
Sbjct: 252 DPLSLGLAVVGMLNKLQGVNGSKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRM 311
Query: 432 AHQGTFMCSGGFTRKLGMEAVAQGDADLVSYGRLFISNPDLVLRFKLNAPLTKYNRKTFY 253
A+ GTFM SGGF ++LGM+AV QGDADLVSYGRLFI+NPDLV RFK++ L KYNRKTFY
Sbjct: 312 AYNGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGELNKYNRKTFY 371
Query: 252 TQDPVKGYTDYPFL 211
TQDPV GYTDYPFL
Sbjct: 372 TQDPVVGYTDYPFL 385
>gb|AAG15379.1|AF293653_1 12-oxo-phytodienoate reductase [Arabidopsis thaliana]
Length = 391
Score = 203 bits (517), Expect = 1e-51
Identities = 99/134 (73%), Positives = 114/134 (84%)
Frame = -2
Query: 612 DPLRLGLAVVERLNNLQKRLGRKLSYLHVTQPRYTAYGPTESGRPGSEEEETQLMRNLRK 433
+PL LGLAVV+ LN LQ G KL+YLHVTQPRY AYG TESGR GS+EEE +LM++LR
Sbjct: 252 NPLSLGLAVVDMLNKLQDVNGLKLAYLHVTQPRYHAYGQTESGRQGSDEEEAKLMKSLRM 311
Query: 432 AHQGTFMCSGGFTRKLGMEAVAQGDADLVSYGRLFISNPDLVLRFKLNAPLTKYNRKTFY 253
A++GTFM SGGF ++LGM+AV QGDADLVSYGRLFI+NPDLV RFK++ L KYNRKTFY
Sbjct: 312 AYKGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVSRFKIDGKLNKYNRKTFY 371
Query: 252 TQDPVKGYTDYPFL 211
TQDPV GYTDYPFL
Sbjct: 372 TQDPVVGYTDYPFL 385
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,859,950
Number of Sequences: 1393205
Number of extensions: 10836807
Number of successful extensions: 20867
Number of sequences better than 10.0: 149
Number of HSP's better than 10.0 without gapping: 20400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20798
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
