Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002392A_C01 KMC002392A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA86060.1| senescencs-related protein [Pyrus pyrifolia] 206 6e-58
gb|AAN64920.1| putative dehydrogenase [Lycopersicon esculentum] 207 8e-58
gb|AAM03044.1| putative dihydroorotate dehydrogenase [Oryza sativa] 192 1e-53
ref|NP_188408.1| dehydrogenase, putative; protein id: At3g17810.... 186 3e-52
ref|NP_697316.1| dihydroorotate dehydrogenase family protein [Br... 70 2e-11
>dbj|BAA86060.1| senescencs-related protein [Pyrus pyrifolia]
Length = 424
Score = 206 bits (525), Expect(2) = 6e-58
Identities = 101/116 (87%), Positives = 110/116 (94%)
Frame = -3
Query: 594 PIALAKVMSIAKMMKSEFDSEDYSLSAIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 415
PIALAKVM+IAK+MKSEF DYSLS IGGVE+GGDAAEFILLGANTVQVCTGVMMHGYG
Sbjct: 288 PIALAKVMNIAKLMKSEFGDTDYSLSGIGGVESGGDAAEFILLGANTVQVCTGVMMHGYG 347
Query: 414 LVKKLCVELQDFMKKHNFTSIEDFRGTSLQYFTTHTDLVQRQQEAIRQRKAIRKGL 247
+VKKLC ELQDFMK+HNF+SIEDFRG SL+YFTTHTDLV+RQQEAI+QRKAIRKGL
Sbjct: 348 VVKKLCSELQDFMKQHNFSSIEDFRGASLEYFTTHTDLVRRQQEAIKQRKAIRKGL 403
Score = 39.7 bits (91), Expect(2) = 6e-58
Identities = 16/18 (88%), Positives = 18/18 (99%)
Frame = -2
Query: 235 RDWTGDGFVKESESMVSN 182
+DWTGDGFVKE+ESMVSN
Sbjct: 407 KDWTGDGFVKETESMVSN 424
>gb|AAN64920.1| putative dehydrogenase [Lycopersicon esculentum]
Length = 429
Score = 207 bits (528), Expect(2) = 8e-58
Identities = 101/116 (87%), Positives = 112/116 (96%)
Frame = -3
Query: 594 PIALAKVMSIAKMMKSEFDSEDYSLSAIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 415
PIALAKVM+IA+MMKSEF +DYSLSAIGGVETGGDAAEFILLGA+TVQVCTGVMMHGYG
Sbjct: 293 PIALAKVMNIARMMKSEFGDKDYSLSAIGGVETGGDAAEFILLGADTVQVCTGVMMHGYG 352
Query: 414 LVKKLCVELQDFMKKHNFTSIEDFRGTSLQYFTTHTDLVQRQQEAIRQRKAIRKGL 247
LVK LC EL+DFM+KHNF+SIEDFRGTSL+YFTTHTDLV+RQQEAIRQRKA++KGL
Sbjct: 353 LVKTLCSELKDFMRKHNFSSIEDFRGTSLEYFTTHTDLVRRQQEAIRQRKAVKKGL 408
Score = 38.1 bits (87), Expect(2) = 8e-58
Identities = 15/18 (83%), Positives = 18/18 (99%)
Frame = -2
Query: 235 RDWTGDGFVKESESMVSN 182
+DWTGDGFV+E+ESMVSN
Sbjct: 412 KDWTGDGFVQETESMVSN 429
>gb|AAM03044.1| putative dihydroorotate dehydrogenase [Oryza sativa]
Length = 201
Score = 192 bits (487), Expect(2) = 1e-53
Identities = 97/116 (83%), Positives = 105/116 (89%)
Frame = -3
Query: 594 PIALAKVMSIAKMMKSEFDSEDYSLSAIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 415
PIALAKVM IA+MMK EF ++ SLSAIGGVETG DAAEFILLGA+TVQVCTGVMMHGYG
Sbjct: 66 PIALAKVMQIARMMKEEF-ADGQSLSAIGGVETGNDAAEFILLGADTVQVCTGVMMHGYG 124
Query: 414 LVKKLCVELQDFMKKHNFTSIEDFRGTSLQYFTTHTDLVQRQQEAIRQRKAIRKGL 247
LVKKLC ELQDFM++HNF+SIEDFRG SL YFTTHTDLV RQ+EAI QRKAIRKGL
Sbjct: 125 LVKKLCAELQDFMRQHNFSSIEDFRGASLPYFTTHTDLVHRQREAINQRKAIRKGL 180
Score = 39.7 bits (91), Expect(2) = 1e-53
Identities = 16/18 (88%), Positives = 18/18 (99%)
Frame = -2
Query: 235 RDWTGDGFVKESESMVSN 182
+DWTGDGFVKE+ESMVSN
Sbjct: 184 KDWTGDGFVKETESMVSN 201
>ref|NP_188408.1| dehydrogenase, putative; protein id: At3g17810.1, supported by
cDNA: gi_14334711, supported by cDNA: gi_16323429
[Arabidopsis thaliana] gi|9294485|dbj|BAB02704.1|
senescencs-related protein; dihydroorotate
dehydrogenase-like protein [Arabidopsis thaliana]
gi|14334712|gb|AAK59534.1| putative dehydrogenase
[Arabidopsis thaliana] gi|16323430|gb|AAL15209.1|
putative dehydrogenase [Arabidopsis thaliana]
gi|24850451|gb|AAN64919.1| putative dehydrogenase
[Arabidopsis thaliana]
Length = 426
Score = 186 bits (472), Expect(2) = 3e-52
Identities = 94/116 (81%), Positives = 106/116 (91%)
Frame = -3
Query: 594 PIALAKVMSIAKMMKSEFDSEDYSLSAIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 415
PIALAKVM+IAKMMKSEF SED SLS IGGVETG DAAEFILLG+NTVQVCTGVMMHGYG
Sbjct: 291 PIALAKVMNIAKMMKSEF-SEDRSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMHGYG 349
Query: 414 LVKKLCVELQDFMKKHNFTSIEDFRGTSLQYFTTHTDLVQRQQEAIRQRKAIRKGL 247
VK LC EL+DFMK+HNF++IE+FRG SLQYFTTHTDLV+RQ+EA+ QRKA ++GL
Sbjct: 350 HVKTLCAELKDFMKQHNFSTIEEFRGHSLQYFTTHTDLVKRQKEAVEQRKAEKRGL 405
Score = 41.2 bits (95), Expect(2) = 3e-52
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -2
Query: 259 KKRFASLTRDWTGDGFVKESESMVSN 182
+KR +DWTGDGFVKE+ESMVSN
Sbjct: 401 EKRGLKSDKDWTGDGFVKETESMVSN 426
>ref|NP_697316.1| dihydroorotate dehydrogenase family protein [Brucella suis 1330]
gi|23347067|gb|AAN29231.1|AE014340_9 dihydroorotate
dehydrogenase family protein [Brucella suis 1330]
Length = 436
Score = 70.5 bits (171), Expect = 2e-11
Identities = 36/93 (38%), Positives = 57/93 (60%)
Frame = -3
Query: 594 PIALAKVMSIAKMMKSEFDSEDYSLSAIGGVETGGDAAEFILLGANTVQVCTGVMMHGYG 415
PIAL V IA+ + ++ +S IGG+ T DAAEFI LG TVQVCT M +G+
Sbjct: 239 PIALNMVAEIAR----DAETAGLPISGIGGITTWRDAAEFIALGCGTVQVCTAAMTYGFK 294
Query: 414 LVKKLCVELQDFMKKHNFTSIEDFRGTSLQYFT 316
+V+++ L D+M + +++DF+G ++ + T
Sbjct: 295 VVQEMIDGLSDWMDSKGYQTLDDFQGCAVSHVT 327
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,802,038
Number of Sequences: 1393205
Number of extensions: 9903642
Number of successful extensions: 32043
Number of sequences better than 10.0: 168
Number of HSP's better than 10.0 without gapping: 29345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31561
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
