Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002390A_C01 KMC002390A_c01
(617 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194153.1| putative protein; protein id: At4g24220.1, supp... 182 2e-45
emb|CAC80137.1| progesterone 5-beta-reductase [Digitalis purpurea] 178 6e-44
gb|AAO63776.1| unknown [Populus tremuloides] 169 3e-41
dbj|BAC20032.1| putative induced upon wounding stress [Oryza sat... 138 7e-32
emb|CAA68126.1| induced upon wounding stress [Arabidopsis thaliana] 127 9e-29
>ref|NP_194153.1| putative protein; protein id: At4g24220.1, supported by cDNA:
34176., supported by cDNA: gi_17064749 [Arabidopsis
thaliana] gi|7487331|pir||T09885 hypothetical protein
T22A6.50 - Arabidopsis thaliana
gi|5051764|emb|CAB45057.1| putative protein [Arabidopsis
thaliana] gi|7269272|emb|CAB79332.1| putative protein
[Arabidopsis thaliana] gi|17064750|gb|AAL32529.1|
putative protein [Arabidopsis thaliana]
gi|21592923|gb|AAM64873.1| induced upon wounding stress
[Arabidopsis thaliana]
Length = 388
Score = 182 bits (463), Expect = 2e-45
Identities = 84/128 (65%), Positives = 102/128 (79%)
Frame = -1
Query: 617 AVDPYAANEAFNCSNGDVFKWKHMWKVLAEQFEIEEYGFFEDDSSDLRLSEMMKDKEAVW 438
AVDPYA NEAFNC+N D+FKWKH+WK+LAEQF IEEYGF ++ +L L EMMK KE VW
Sbjct: 263 AVDPYAKNEAFNCNNADIFKWKHLWKILAEQFGIEEYGF--EEGKNLGLVEMMKGKERVW 320
Query: 437 EEIVKENQLQPTKLNEVAEWWFVELMFSGGSLLDSMNKAQEHGFLGFRNTKNSFISWIDK 258
EE+VKENQLQ KL EV WWF +++ ++DSMNK++E+GFLGFRN+ NSFISWIDK
Sbjct: 321 EEMVKENQLQEKKLEEVGVWWFADVILGVEGMIDSMNKSKEYGFLGFRNSNNSFISWIDK 380
Query: 257 TQDCKIVP 234
+ KIVP
Sbjct: 381 YKAFKIVP 388
>emb|CAC80137.1| progesterone 5-beta-reductase [Digitalis purpurea]
Length = 389
Score = 178 bits (451), Expect = 6e-44
Identities = 85/130 (65%), Positives = 101/130 (77%), Gaps = 2/130 (1%)
Frame = -1
Query: 617 AVDPYAANEAFNCSNGDVFKWKHMWKVLAEQFEIE--EYGFFEDDSSDLRLSEMMKDKEA 444
AVDPYA NEAFN SNGDVFKWKH WKVLAEQF +E EYG + DL+L ++MK KEA
Sbjct: 264 AVDPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYG----EGVDLKLQDLMKGKEA 319
Query: 443 VWEEIVKENQLQPTKLNEVAEWWFVELMFSGGSLLDSMNKAQEHGFLGFRNTKNSFISWI 264
VWEEIV+EN L PTKL ++ WWF +++ LDSMNK++EHGFLGFRN+KN+FISWI
Sbjct: 320 VWEEIVRENGLTPTKLKDIGIWWFGDVILGNECFLDSMNKSKEHGFLGFRNSKNAFISWI 379
Query: 263 DKTQDCKIVP 234
DK + KIVP
Sbjct: 380 DKAKAYKIVP 389
>gb|AAO63776.1| unknown [Populus tremuloides]
Length = 391
Score = 169 bits (427), Expect = 3e-41
Identities = 79/127 (62%), Positives = 98/127 (76%)
Frame = -1
Query: 614 VDPYAANEAFNCSNGDVFKWKHMWKVLAEQFEIEEYGFFEDDSSDLRLSEMMKDKEAVWE 435
V+P A NEAFN +NGD+FKWKHMW VLA++F IE+YGF E +SS + +E MKDK VWE
Sbjct: 266 VEPKAKNEAFNINNGDLFKWKHMWTVLAQEFGIEKYGFVEGESS-VTFAEKMKDKGPVWE 324
Query: 434 EIVKENQLQPTKLNEVAEWWFVELMFSGGSLLDSMNKAQEHGFLGFRNTKNSFISWIDKT 255
EIVK+NQL KL +V WWF +L+FSG + SMNKA+EHGFLGFRN+K SF+SWI K
Sbjct: 325 EIVKKNQLLSNKLEQVGGWWFGDLIFSGSGYVASMNKAKEHGFLGFRNSKKSFVSWIHKM 384
Query: 254 QDCKIVP 234
+ K+VP
Sbjct: 385 RAYKVVP 391
>dbj|BAC20032.1| putative induced upon wounding stress [Oryza sativa (japonica
cultivar-group)]
Length = 410
Score = 138 bits (347), Expect = 7e-32
Identities = 68/127 (53%), Positives = 88/127 (68%), Gaps = 1/127 (0%)
Frame = -1
Query: 611 DPYAANEAFNCSNGDVFKWKHMWKVLAEQFEIEEYGFFEDDSSDLRLSEMMKDKEAVWEE 432
D A NEAFNCSNGD++KWK +W VLA +F +E G+ E + + L+ M KEAVW E
Sbjct: 285 DAAAKNEAFNCSNGDIYKWKQLWPVLAGKFGVEWAGY-EGEERRVGLTAAMAGKEAVWAE 343
Query: 431 IVKENQLQPTKLNEVAEWWFVELMFSGG-SLLDSMNKAQEHGFLGFRNTKNSFISWIDKT 255
IV E +L T+L EVA WWFV+ +F +D+MNK++EHGFLGFRNT SF +WIDK
Sbjct: 344 IVAEEKLVATELGEVANWWFVDALFMDKWEFVDTMNKSKEHGFLGFRNTLRSFEAWIDKM 403
Query: 254 QDCKIVP 234
+ +IVP
Sbjct: 404 KLYRIVP 410
>emb|CAA68126.1| induced upon wounding stress [Arabidopsis thaliana]
Length = 386
Score = 127 bits (320), Expect = 9e-29
Identities = 71/130 (54%), Positives = 83/130 (63%), Gaps = 2/130 (1%)
Frame = -1
Query: 617 AVDPYAANEAFNCSNGDVFKWKHMW--KVLAEQFEIEEYGFFEDDSSDLRLSEMMKDKEA 444
AVDPYA NEA + K+LAEQF IEEYG L EMMK KE
Sbjct: 262 AVDPYAKNEAILTDTMLISSSGRSSDRKILAEQFGIEEYG-----GRIWGLVEMMKGKER 316
Query: 443 VWEEIVKENQLQPTKLNEVAEWWFVELMFSGGSLLDSMNKAQEHGFLGFRNTKNSFISWI 264
VWEE+VKENQLQ KL EV WWF +++ ++DSMNK +E+GFLGFRN+ NSFISWI
Sbjct: 317 VWEEMVKENQLQEKKLEEVGVWWFADVILGVEGMIDSMNKRKEYGFLGFRNSNNSFISWI 376
Query: 263 DKTQDCKIVP 234
DK + KIVP
Sbjct: 377 DKYKAFKIVP 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,434,351
Number of Sequences: 1393205
Number of extensions: 12113654
Number of successful extensions: 40918
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 38473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40777
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
