Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002386A_C01 KMC002386A_c01
(777 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568128.1| auxin-regulated protein; protein id: At5g03880.... 104 9e-33
pir||T48415 hypothetical protein F8F6.90 - Arabidopsis thaliana ... 104 9e-33
gb|AAM65224.1| unknown [Arabidopsis thaliana] 104 1e-32
pir||T04004 hypothetical protein T5L19.130 - Arabidopsis thalian... 43 2e-06
ref|NP_567349.1| putative protein; protein id: At4g10000.1, supp... 40 9e-06
>ref|NP_568128.1| auxin-regulated protein; protein id: At5g03880.1, supported by
cDNA: 37668., supported by cDNA: gi_15451053, supported
by cDNA: gi_20148314 [Arabidopsis thaliana]
gi|15451054|gb|AAK96798.1| Unknown protein [Arabidopsis
thaliana] gi|20148315|gb|AAM10048.1| unknown protein
[Arabidopsis thaliana]
Length = 339
Score = 104 bits (260), Expect(2) = 9e-33
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = -2
Query: 776 GDGSVPCTLSLGFLTNLTCGLAMLSRITKGTTYTPAKLPPPPLKLWAYEGSPFCKLVREV 597
GDG+VP +LSLG LT +T G AM+ R+ KG YTPAKLPP PL+ WAYEGSPFCKLVREV
Sbjct: 220 GDGTVPLSLSLGALTAITAGFAMIGRMGKGNLYTPAKLPPKPLEFWAYEGSPFCKLVREV 279
Query: 596 LVELEL 579
LVELEL
Sbjct: 280 LVELEL 285
Score = 58.2 bits (139), Expect(2) = 9e-33
Identities = 24/43 (55%), Positives = 32/43 (73%)
Frame = -1
Query: 546 APNDIYYIREPGHFQAPFLEDPNTGIEMFESADIIEYLRTIYA 418
+P + + GHFQ P+LEDPNTG+ MFESA+I+EYL+ YA
Sbjct: 296 SPKRQVLLEKAGHFQVPYLEDPNTGVAMFESAEIVEYLKQTYA 338
Score = 37.0 bits (84), Expect(2) = 5e-06
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 513 GHFQAPFLEDPNTGIEMFESADIIEYLRTIY 421
G Q P++ DPNTG+ M+ES II+YL Y
Sbjct: 189 GKQQFPYMVDPNTGVSMYESDGIIKYLSEKY 219
Score = 35.4 bits (80), Expect(2) = 5e-06
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = -2
Query: 707 LSRITKGTTYTPAKLPPPPLKLWAYEGSPFCKLVREVLVELEL 579
L IT T P P++++ +EG PFC+ VRE++ L+L
Sbjct: 124 LGGITVKETAKVGPRPEKPIEIYEFEGCPFCRKVREMVAVLDL 166
>pir||T48415 hypothetical protein F8F6.90 - Arabidopsis thaliana
gi|7406398|emb|CAB85508.1| putative protein [Arabidopsis
thaliana] gi|9758017|dbj|BAB08614.1|
emb|CAB85508.1~gene_id:MED24.18~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 331
Score = 104 bits (260), Expect(2) = 9e-33
Identities = 49/66 (74%), Positives = 55/66 (83%)
Frame = -2
Query: 776 GDGSVPCTLSLGFLTNLTCGLAMLSRITKGTTYTPAKLPPPPLKLWAYEGSPFCKLVREV 597
GDG+VP +LSLG LT +T G AM+ R+ KG YTPAKLPP PL+ WAYEGSPFCKLVREV
Sbjct: 212 GDGTVPLSLSLGALTAITAGFAMIGRMGKGNLYTPAKLPPKPLEFWAYEGSPFCKLVREV 271
Query: 596 LVELEL 579
LVELEL
Sbjct: 272 LVELEL 277
Score = 58.2 bits (139), Expect(2) = 9e-33
Identities = 24/43 (55%), Positives = 32/43 (73%)
Frame = -1
Query: 546 APNDIYYIREPGHFQAPFLEDPNTGIEMFESADIIEYLRTIYA 418
+P + + GHFQ P+LEDPNTG+ MFESA+I+EYL+ YA
Sbjct: 288 SPKRQVLLEKAGHFQVPYLEDPNTGVAMFESAEIVEYLKQTYA 330
Score = 37.0 bits (84), Expect = 0.32
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 513 GHFQAPFLEDPNTGIEMFESADIIEYLRTIY 421
G Q P++ DPNTG+ M+ES II+YL Y
Sbjct: 181 GKQQFPYMVDPNTGVSMYESDGIIKYLSEKY 211
>gb|AAM65224.1| unknown [Arabidopsis thaliana]
Length = 339
Score = 104 bits (259), Expect(2) = 1e-32
Identities = 49/66 (74%), Positives = 54/66 (81%)
Frame = -2
Query: 776 GDGSVPCTLSLGFLTNLTCGLAMLSRITKGTTYTPAKLPPPPLKLWAYEGSPFCKLVREV 597
GDG VP +LSLG LT +T G AM+ R+ KG YTPAKLPP PL+ WAYEGSPFCKLVREV
Sbjct: 220 GDGKVPLSLSLGALTAITAGFAMIGRMGKGNLYTPAKLPPKPLEFWAYEGSPFCKLVREV 279
Query: 596 LVELEL 579
LVELEL
Sbjct: 280 LVELEL 285
Score = 58.2 bits (139), Expect(2) = 1e-32
Identities = 24/43 (55%), Positives = 32/43 (73%)
Frame = -1
Query: 546 APNDIYYIREPGHFQAPFLEDPNTGIEMFESADIIEYLRTIYA 418
+P + + GHFQ P+LEDPNTG+ MFESA+I+EYL+ YA
Sbjct: 296 SPKRQVLLEKAGHFQVPYLEDPNTGVAMFESAEIVEYLKQTYA 338
Score = 37.0 bits (84), Expect(2) = 5e-06
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = -1
Query: 513 GHFQAPFLEDPNTGIEMFESADIIEYLRTIY 421
G Q P++ DPNTG+ M+ES II+YL Y
Sbjct: 189 GKQQFPYMVDPNTGVSMYESDGIIKYLSEKY 219
Score = 35.4 bits (80), Expect(2) = 5e-06
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = -2
Query: 707 LSRITKGTTYTPAKLPPPPLKLWAYEGSPFCKLVREVLVELEL 579
L IT T P P++++ +EG PFC+ VRE++ L+L
Sbjct: 124 LGGITVKETAKVGPRPEKPIEIYEFEGCPFCRKVREMVAVLDL 166
>pir||T04004 hypothetical protein T5L19.130 - Arabidopsis thaliana
gi|4539003|emb|CAB39624.1| putative protein [Arabidopsis
thaliana] gi|7267696|emb|CAB78123.1| putative protein
[Arabidopsis thaliana]
Length = 327
Score = 42.7 bits (99), Expect(2) = 2e-06
Identities = 25/60 (41%), Positives = 35/60 (57%)
Frame = -2
Query: 758 CTLSLGFLTNLTCGLAMLSRITKGTTYTPAKLPPPPLKLWAYEGSPFCKLVREVLVELEL 579
CTL G++ L +S K +T LPP L+L++YE +P+ +LVRE L ELEL
Sbjct: 214 CTLFTGWMPTLLRAGRGMSLWDKAST----DLPPKMLELFSYENNPYSRLVREALCELEL 269
Score = 36.2 bits (82), Expect(2) = 0.006
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Frame = -2
Query: 725 TCGLAMLSRITKGTTYTPAKL--------PPPPLKLWAYEGSPFCKLVREVLVELEL 579
T LA ++R+ G+ + + PP L+L+ +E PFC+ VRE + EL+L
Sbjct: 98 TSSLASVARLPWGSRVSTGSIDNQDVSSNPPLRLQLFEFEACPFCRRVREAMTELDL 154
Score = 31.2 bits (69), Expect(2) = 2e-06
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = -1
Query: 513 GHFQAPFLEDPNTGIEMFESADIIEYLRTIYA 418
G + PFL DPNTG+++ + I+ YL Y+
Sbjct: 291 GSNKVPFLVDPNTGVQLGDYEKILAYLFKTYS 322
Score = 25.8 bits (55), Expect(2) = 0.006
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 522 REPGHFQAPFLEDPNTGIEMFESAD 448
R G PFL DPNT M+ES +
Sbjct: 174 RSGGKEMFPFLVDPNTETLMYESGE 198
>ref|NP_567349.1| putative protein; protein id: At4g10000.1, supported by cDNA:
40182. [Arabidopsis thaliana]
Length = 333
Score = 40.4 bits (93), Expect(2) = 9e-06
Identities = 25/64 (39%), Positives = 36/64 (56%)
Frame = -2
Query: 770 GSVPCTLSLGFLTNLTCGLAMLSRITKGTTYTPAKLPPPPLKLWAYEGSPFCKLVREVLV 591
G + TL G++ L +S K +T LPP L+L++YE +P+ +LVRE L
Sbjct: 216 GLLESTLFTGWMPTLLRAGRGMSLWDKAST----DLPPKMLELFSYENNPYSRLVREALC 271
Query: 590 ELEL 579
ELEL
Sbjct: 272 ELEL 275
Score = 36.2 bits (82), Expect(2) = 2e-05
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 8/57 (14%)
Frame = -2
Query: 725 TCGLAMLSRITKGTTYTPAKL--------PPPPLKLWAYEGSPFCKLVREVLVELEL 579
T LA ++R+ G+ + + PP L+L+ +E PFC+ VRE + EL+L
Sbjct: 98 TSSLASVARLPWGSRVSTGSIDNQDVSSNPPLRLQLFEFEACPFCRRVREAMTELDL 154
Score = 34.7 bits (78), Expect(2) = 2e-05
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = -1
Query: 522 REPGHFQAPFLEDPNTGIEMFESADIIEYL 433
R G PFL DPNT M+ES DI++YL
Sbjct: 174 RSGGKEMFPFLVDPNTETLMYESGDIVKYL 203
Score = 31.2 bits (69), Expect(2) = 9e-06
Identities = 13/32 (40%), Positives = 20/32 (61%)
Frame = -1
Query: 513 GHFQAPFLEDPNTGIEMFESADIIEYLRTIYA 418
G + PFL DPNTG+++ + I+ YL Y+
Sbjct: 297 GSNKVPFLVDPNTGVQLGDYEKILAYLFKTYS 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 647,628,011
Number of Sequences: 1393205
Number of extensions: 13886073
Number of successful extensions: 39928
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 37331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39872
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38375267554
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
