Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002385A_C01 KMC002385A_c01
(704 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176786.1| AMP-binding enzyme, putative; protein id: At1g6... 121 8e-27
pir||H96682 hypothetical protein F12P19.4 [imported] - Arabidops... 115 8e-25
ref|NP_107373.1| probable AMP-binding protein [Mesorhizobium lot... 114 1e-24
gb|AAN05507.1| Putative AMP-binding protein [Oryza sativa (japon... 113 3e-24
ref|NP_176764.1| amp-binding protein, putative; protein id: At1g... 113 3e-24
>ref|NP_176786.1| AMP-binding enzyme, putative; protein id: At1g66120.1 [Arabidopsis
thaliana] gi|25326835|pir||H96685 probable AMP-binding
enzyme F15E12.22 [imported] - Arabidopsis thaliana
gi|12322610|gb|AAG51304.1|AC026480_11 AMP-binding
enzyme, putative [Arabidopsis thaliana]
gi|28393804|gb|AAO42311.1| putative AMP-binding enzyme
[Arabidopsis thaliana]
Length = 572
Score = 121 bits (304), Expect = 8e-27
Identities = 59/99 (59%), Positives = 71/99 (71%)
Frame = -1
Query: 704 SVEVESVLYRHPRVLEAAVVAVPHPKWGESPCAFVSLKKDSSNDHVTEGDIIGFCRKNMP 525
S+EVE VLY + VLEAAVVA+PHP WGE+PCAFV LKK +EGD+I +CR+NMP
Sbjct: 455 SIEVEKVLYMYQEVLEAAVVAMPHPLWGETPCAFVVLKKGEEGLVTSEGDLIKYCRENMP 514
Query: 524 HFMVPKMVKFLEELPKTSTGKVQKFELRVQAKCFEVSEN 408
HFM PK V F +ELPK S GK+ K +LR AK V E+
Sbjct: 515 HFMCPKKVVFFQELPKNSNGKILKSKLRDIAKALVVRED 553
>pir||H96682 hypothetical protein F12P19.4 [imported] - Arabidopsis thaliana
gi|6227012|gb|AAF06048.1|AC009513_4 Similar to gb|X94625
amp-binding protein from Brassica napus and is a member
of the PF|00501 AMP-binding enzymes. [Arabidopsis
thaliana]
Length = 551
Score = 115 bits (287), Expect = 8e-25
Identities = 68/127 (53%), Positives = 83/127 (64%), Gaps = 16/127 (12%)
Frame = -1
Query: 704 SVEVESVLYRHPRVLEAAVVAVPHPKWGESPCAFVSL------KKDSSNDHVT-EGDIIG 546
S+EVE VLY H +VLEAAVVA+PHP WGE+PCAFV L ++D + VT EGD+I
Sbjct: 425 SIEVERVLYEHQKVLEAAVVAMPHPLWGETPCAFVVLNQGETNQRDREKESVTKEGDLIK 484
Query: 545 FCRKNMPHFMVPKMVKFLEELPKTSTGKVQK--FELRVQAKCFEVSE-NLQSK------N 393
+CR+NMPHFM P+ V FLEELPK GK+ K LR AK V E + +SK
Sbjct: 485 YCRENMPHFMCPRKVVFLEELPKNGNGKILKPNLSLRDIAKGLVVDEDDTRSKKVQGRGG 544
Query: 392 NNKSSQL 372
NN SS+L
Sbjct: 545 NNVSSRL 551
>ref|NP_107373.1| probable AMP-binding protein [Mesorhizobium loti]
gi|14026562|dbj|BAB53159.1| probable AMP-binding protein
[Mesorhizobium loti]
Length = 541
Score = 114 bits (286), Expect = 1e-24
Identities = 59/92 (64%), Positives = 68/92 (73%)
Frame = -1
Query: 704 SVEVESVLYRHPRVLEAAVVAVPHPKWGESPCAFVSLKKDSSNDHVTEGDIIGFCRKNMP 525
SVEVESVLYRHP + AAVVA PHPKWGESPCAFV L++ +S TE +II FCR N+
Sbjct: 448 SVEVESVLYRHPAISVAAVVARPHPKWGESPCAFVELREGAS---ATEAEIIAFCRANIA 504
Query: 524 HFMVPKMVKFLEELPKTSTGKVQKFELRVQAK 429
HF PK V F LPKT+TGK+QKF LR A+
Sbjct: 505 HFKAPKTVVF-GPLPKTATGKIQKFILRAAAR 535
>gb|AAN05507.1| Putative AMP-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 548
Score = 113 bits (282), Expect = 3e-24
Identities = 58/92 (63%), Positives = 71/92 (77%)
Frame = -1
Query: 704 SVEVESVLYRHPRVLEAAVVAVPHPKWGESPCAFVSLKKDSSNDHVTEGDIIGFCRKNMP 525
S+EVESV++ HP VLEAAVVA P WGE+PCAFV L KD +N TEG+II FCR+ +P
Sbjct: 448 SIEVESVIFSHPAVLEAAVVARPDDYWGETPCAFVKL-KDGAN--ATEGEIISFCRERLP 504
Query: 524 HFMVPKMVKFLEELPKTSTGKVQKFELRVQAK 429
H+M PK V F ++LPKTSTGK QKF LR +A+
Sbjct: 505 HYMAPKTVVF-DDLPKTSTGKTQKFVLREKAR 535
>ref|NP_176764.1| amp-binding protein, putative; protein id: At1g65890.1, supported
by cDNA: gi_15215765, supported by cDNA: gi_16974330
[Arabidopsis thaliana] gi|25326834|pir||B96683
hypothetical protein F12P19.6 [imported] - Arabidopsis
thaliana gi|6227014|gb|AAF06050.1|AC009513_6 Similar to
gb|X94625 amp-binding protein from Brassica napus and is
a member of the PF|00501 AMP-binding enzymes.
[Arabidopsis thaliana]
Length = 578
Score = 113 bits (282), Expect = 3e-24
Identities = 57/112 (50%), Positives = 78/112 (68%), Gaps = 9/112 (8%)
Frame = -1
Query: 704 SVEVESVLYRHPRVLEAAVVAVPHPKWGESPCAFVSLKKDSSNDH-------VTEGDIIG 546
SVEVE+++Y++P+VLE AVVA+PHP WGE+PCAFV L+K +N+ E D+I
Sbjct: 455 SVEVENIIYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETNNEDREDKLVTKERDLIE 514
Query: 545 FCRKNMPHFMVPKMVKFLEELPKTSTGKVQKFELRVQAK--CFEVSENLQSK 396
+CR+N+PHFM P+ V FL+ELPK GK+ K +LR AK E N++SK
Sbjct: 515 YCRENLPHFMCPRKVVFLDELPKNGNGKILKPKLRDIAKGLVAEDEVNVRSK 566
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 631,881,323
Number of Sequences: 1393205
Number of extensions: 14920976
Number of successful extensions: 167954
Number of sequences better than 10.0: 1888
Number of HSP's better than 10.0 without gapping: 69239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129938
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32091529758
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
