Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002375A_C02 KMC002375A_c02
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O50044|KDSA_PEA 2-dehydro-3-deoxyphosphooctonate aldolase (Ph... 146 2e-34
pir||E86298 hypothetical protein F3O9.14 [imported] - Arabidopsi... 142 4e-33
ref|NP_173084.1| putative 3-deoxy-D-manno-2-octulosonate-8-phosp... 142 4e-33
dbj|BAB41014.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabi... 141 5e-33
ref|NP_178068.1| 2-dehydro-3-deoxyphosphooctonate aldolase, puta... 141 5e-33
>sp|O50044|KDSA_PEA 2-dehydro-3-deoxyphosphooctonate aldolase
(Phospho-2-dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) gi|7436655|pir||T06816
2-dehydro-3-deoxy-phosphooctonate aldolase (EC 4.1.2.16)
- garden pea gi|2695861|emb|CAA74644.1|
3-deoxy-D-manno-2-octulosonate-8-phosphate synthase
[Pisum sativum] gi|2695863|emb|CAA74645.1|
3-deoxy-D-manno-2-octulosonate-8-phosphate synthase
[Pisum sativum]
Length = 290
Score = 146 bits (368), Expect = 2e-34
Identities = 69/77 (89%), Positives = 75/77 (96%)
Frame = -3
Query: 554 ASGGLRVLIPCLARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEQLLEELVAISR 375
ASGGLR LIPC+ART+VAVGVDGIFMEVHDDPL+APVDGPTQWPLRHLE+LLEEL+AISR
Sbjct: 214 ASGGLRELIPCIARTSVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHLEELLEELIAISR 273
Query: 374 VSKGKQQFNIDLTPFRE 324
VSKGK+ FNIDLTPFRE
Sbjct: 274 VSKGKKPFNIDLTPFRE 290
>pir||E86298 hypothetical protein F3O9.14 [imported] - Arabidopsis thaliana
gi|4966354|gb|AAD34685.1|AC006341_13 Similar to
gb|Y14272 3-deoxy-D-manno-2-octulosonate-8-phosphate
synthase from Pisum sativum. [Arabidopsis thaliana]
Length = 299
Score = 142 bits (357), Expect = 4e-33
Identities = 66/77 (85%), Positives = 74/77 (95%)
Frame = -3
Query: 554 ASGGLRVLIPCLARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEQLLEELVAISR 375
ASGGLR LIPC+ARTAVAVGVDGIFMEVHDDPL+APVDGPTQWPLRHLE+LLEEL+AI+
Sbjct: 223 ASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHLEELLEELIAIAS 282
Query: 374 VSKGKQQFNIDLTPFRE 324
V+KGKQQF IDLTP+R+
Sbjct: 283 VTKGKQQFQIDLTPYRD 299
>ref|NP_173084.1| putative 3-deoxy-D-manno-2-octulosonate-8-phosphate synthase;
protein id: At1g16340.1 [Arabidopsis thaliana]
Length = 291
Score = 142 bits (357), Expect = 4e-33
Identities = 66/77 (85%), Positives = 74/77 (95%)
Frame = -3
Query: 554 ASGGLRVLIPCLARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEQLLEELVAISR 375
ASGGLR LIPC+ARTAVAVGVDGIFMEVHDDPL+APVDGPTQWPLRHLE+LLEEL+AI+
Sbjct: 215 ASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLNAPVDGPTQWPLRHLEELLEELIAIAS 274
Query: 374 VSKGKQQFNIDLTPFRE 324
V+KGKQQF IDLTP+R+
Sbjct: 275 VTKGKQQFQIDLTPYRD 291
>dbj|BAB41014.1| 2-dehydro-3-deoxyphosphooctonate aldolase [Arabidopsis thaliana]
Length = 290
Score = 141 bits (356), Expect = 5e-33
Identities = 66/77 (85%), Positives = 74/77 (95%)
Frame = -3
Query: 554 ASGGLRVLIPCLARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEQLLEELVAISR 375
ASGGLR LIPC+ARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLE+LLEEL+AI+R
Sbjct: 214 ASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEELIAIAR 273
Query: 374 VSKGKQQFNIDLTPFRE 324
V+KGKQ+ IDLTP+R+
Sbjct: 274 VTKGKQRLQIDLTPYRD 290
>ref|NP_178068.1| 2-dehydro-3-deoxyphosphooctonate aldolase, putative; protein id:
At1g79500.1, supported by cDNA: gi_13620975, supported
by cDNA: gi_13937186 [Arabidopsis thaliana]
gi|20532134|sp|Q9AV97|KDSA_ARATH
2-dehydro-3-deoxyphosphooctonate aldolase
(Phospho-2-dehydro-3-deoxyoctonate aldolase)
(3-deoxy-D-manno-octulosonic acid 8-phosphate
synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
synthase) gi|25291175|pir||C96826 hypothetical protein
T8K14.8 [imported] - Arabidopsis thaliana
gi|4835760|gb|AAD30227.1|AC007202_9 Strong similarity to
gb|Y14272 3-deoxy-D-manno-2-octulosonate-8-phosphate
synthase from Pisum sativum. ESTs gb|AA067485 and
gb|AI100551 come from this gene. [Arabidopsis thaliana]
gi|13937187|gb|AAK50087.1|AF372947_1 At1g79500/T8K14_8
[Arabidopsis thaliana]
Length = 290
Score = 141 bits (356), Expect = 5e-33
Identities = 66/77 (85%), Positives = 74/77 (95%)
Frame = -3
Query: 554 ASGGLRVLIPCLARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEQLLEELVAISR 375
ASGGLR LIPC+ARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLE+LLEEL+AI+R
Sbjct: 214 ASGGLRELIPCIARTAVAVGVDGIFMEVHDDPLSAPVDGPTQWPLRHLEELLEELIAIAR 273
Query: 374 VSKGKQQFNIDLTPFRE 324
V+KGKQ+ IDLTP+R+
Sbjct: 274 VTKGKQRLQIDLTPYRD 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,354,060
Number of Sequences: 1393205
Number of extensions: 9468926
Number of successful extensions: 25597
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 24923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25586
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
