Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002367A_C01 KMC002367A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10176.1| contains EST D40457(S2456)~similar to clathrin c... 67 2e-10
ref|NP_194186.1| clathrin coat assembly like protein; protein id... 65 4e-10
ref|NP_701062.1| clathrin coat assembly protein, putative [Plasm... 45 7e-04
ref|NP_172543.1| putative clathrin-coat assembly protein; protei... 35 0.42
gb|AAF17661.1|AC009398_10 F20B24.16 [Arabidopsis thaliana] 35 0.42
>dbj|BAC10176.1| contains EST D40457(S2456)~similar to clathrin coat assembly
protein [Oryza sativa (japonica cultivar-group)]
Length = 466
Score = 66.6 bits (161), Expect = 2e-10
Identities = 30/34 (88%), Positives = 33/34 (96%)
Frame = -3
Query: 262 VQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 161
+QV+YLQIAKKSK +NPYRWVRYVTQANSYVARL
Sbjct: 433 LQVRYLQIAKKSKTYNPYRWVRYVTQANSYVARL 466
>ref|NP_194186.1| clathrin coat assembly like protein; protein id: At4g24550.1,
supported by cDNA: gi_18176153 [Arabidopsis thaliana]
gi|7448831|pir||T05579 hypothetical protein F22K18.250 -
Arabidopsis thaliana gi|4220535|emb|CAA23008.1| clathrin
coat assembly like protein [Arabidopsis thaliana]
gi|7269305|emb|CAB79365.1| clathrin coat assembly like
protein [Arabidopsis thaliana]
gi|18176154|gb|AAL59993.1| putative clathrin coat
assembly protein [Arabidopsis thaliana]
Length = 451
Score = 65.5 bits (158), Expect = 4e-10
Identities = 29/34 (85%), Positives = 33/34 (96%)
Frame = -3
Query: 262 VQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 161
+QVKYLQIAKKS ++NPYRWVRYVTQANSYVAR+
Sbjct: 418 LQVKYLQIAKKSSSYNPYRWVRYVTQANSYVARI 451
>ref|NP_701062.1| clathrin coat assembly protein, putative [Plasmodium falciparum
3D7] gi|23496125|gb|AAN35786.1|AE014838_64 clathrin coat
assembly protein, putative [Plasmodium falciparum 3D7]
Length = 436
Score = 44.7 bits (104), Expect = 7e-04
Identities = 18/34 (52%), Positives = 27/34 (78%)
Frame = -3
Query: 262 VQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 161
+++KYL+I + K N +RWVRY+TQ++SYV RL
Sbjct: 402 LRIKYLRIIENYKTSNTHRWVRYITQSSSYVYRL 435
>ref|NP_172543.1| putative clathrin-coat assembly protein; protein id: At1g10730.1
[Arabidopsis thaliana] gi|25320047|pir||G86240
hypothetical protein [imported] - Arabidopsis thaliana
gi|4874275|gb|AAD31340.1|AC007354_13 Similar to
gb|L26291 clathrin-associated protein unc-101 from
Caenorhabditis elegans and is a member of the PF|00928
Adapter complexes medium subunit family. [Arabidopsis
thaliana]
Length = 428
Score = 35.4 bits (80), Expect = 0.42
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3
Query: 262 VQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 161
+QV+YL+I +KS + + WVRY+T A Y RL
Sbjct: 395 IQVRYLKIIEKS-GYQAHPWVRYITMAGEYELRL 427
>gb|AAF17661.1|AC009398_10 F20B24.16 [Arabidopsis thaliana]
Length = 411
Score = 35.4 bits (80), Expect = 0.42
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -3
Query: 262 VQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL 161
+QV+YL+I +KS + + WVRY+T A Y RL
Sbjct: 378 IQVRYLKIIEKS-GYQAHPWVRYITMAGEYELRL 410
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,100,843
Number of Sequences: 1393205
Number of extensions: 7969807
Number of successful extensions: 28741
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 28387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28724
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
