Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002365A_C01 KMC002365A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197233.1| UDP-glucose pyrophosphorylase; protein id: At5g... 59 2e-08
gb|AAK32773.1|AF361605_1 AT3g03250/T17B22_6 [Arabidopsis thaliana] 59 4e-08
ref|NP_186975.1| putative UDP-glucose pyrophosphorylase; protein... 59 4e-08
gb|AAL33919.1| UDP-glucose pyrophosphorylase [Amorpha fruticosa] 57 1e-07
dbj|BAB78700.1| UDP-glucose pyrophosphorylase [Nicotiana tabacum] 56 2e-07
>ref|NP_197233.1| UDP-glucose pyrophosphorylase; protein id: At5g17310.1, supported
by cDNA: gi_13605670 [Arabidopsis thaliana]
gi|12585448|sp|P57751|UDPG_ARATH
UTP--glucose-1-phosphate uridylyltransferase
(UDP-glucose pyrophosphorylase) (UDPGP) (UGPase)
gi|10177076|dbj|BAB10518.1| UDP-glucose
pyrophosphorylase [Arabidopsis thaliana]
gi|13430664|gb|AAK25954.1|AF360244_1 putative
UDP-glucose pyrophosphorylase [Arabidopsis thaliana]
gi|13605671|gb|AAK32829.1|AF361816_1 AT5g17310/MKP11_16
[Arabidopsis thaliana] gi|14532836|gb|AAK64100.1|
putative UDP-glucose pyrophosphorylase [Arabidopsis
thaliana]
Length = 470
Score = 59.3 bits (142), Expect = 2e-08
Identities = 31/57 (54%), Positives = 36/57 (62%)
Frame = -3
Query: 370 MEVLKHLIQNKNEYCMEVKKFGCYPIHFNIFSMATMQVTPKTLTDVKGGTLISHEGR 200
+++LKHLIQNKNEYCMEV TPKTL DVKGGTLIS+EG+
Sbjct: 231 LKILKHLIQNKNEYCMEV--------------------TPKTLADVKGGTLISYEGK 267
>gb|AAK32773.1|AF361605_1 AT3g03250/T17B22_6 [Arabidopsis thaliana]
Length = 469
Score = 58.5 bits (140), Expect = 4e-08
Identities = 31/57 (54%), Positives = 35/57 (61%)
Frame = -3
Query: 370 MEVLKHLIQNKNEYCMEVKKFGCYPIHFNIFSMATMQVTPKTLTDVKGGTLISHEGR 200
+ +LKHLIQNKNEYCMEV TPKTL DVKGGTLIS+EG+
Sbjct: 230 LTILKHLIQNKNEYCMEV--------------------TPKTLADVKGGTLISYEGK 266
>ref|NP_186975.1| putative UDP-glucose pyrophosphorylase; protein id: At3g03250.1,
supported by cDNA: gi_13605558, supported by cDNA:
gi_14334795, supported by cDNA: gi_16323519 [Arabidopsis
thaliana] gi|6714414|gb|AAF26102.1|AC012328_5 putative
UDP-glucose pyrophosphorylase [Arabidopsis thaliana]
gi|14334796|gb|AAK59576.1| putative UDP-glucose
pyrophosphorylase [Arabidopsis thaliana]
gi|16323520|gb|AAL15254.1| putative UDP-glucose
pyrophosphorylase [Arabidopsis thaliana]
Length = 469
Score = 58.5 bits (140), Expect = 4e-08
Identities = 31/57 (54%), Positives = 35/57 (61%)
Frame = -3
Query: 370 MEVLKHLIQNKNEYCMEVKKFGCYPIHFNIFSMATMQVTPKTLTDVKGGTLISHEGR 200
+ +LKHLIQNKNEYCMEV TPKTL DVKGGTLIS+EG+
Sbjct: 230 LTILKHLIQNKNEYCMEV--------------------TPKTLADVKGGTLISYEGK 266
>gb|AAL33919.1| UDP-glucose pyrophosphorylase [Amorpha fruticosa]
Length = 471
Score = 56.6 bits (135), Expect = 1e-07
Identities = 29/57 (50%), Positives = 35/57 (60%)
Frame = -3
Query: 370 MEVLKHLIQNKNEYCMEVKKFGCYPIHFNIFSMATMQVTPKTLTDVKGGTLISHEGR 200
+++L HL++NKNEYCMEV TPKTL DVKGGTLIS+EGR
Sbjct: 232 LKILNHLVKNKNEYCMEV--------------------TPKTLADVKGGTLISYEGR 268
>dbj|BAB78700.1| UDP-glucose pyrophosphorylase [Nicotiana tabacum]
Length = 376
Score = 56.2 bits (134), Expect = 2e-07
Identities = 29/57 (50%), Positives = 35/57 (60%)
Frame = -3
Query: 370 MEVLKHLIQNKNEYCMEVKKFGCYPIHFNIFSMATMQVTPKTLTDVKGGTLISHEGR 200
+++L HLIQNKNEYCMEV TPKTL DVKGGTLIS++G+
Sbjct: 143 LKILNHLIQNKNEYCMEV--------------------TPKTLADVKGGTLISYQGK 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,819,977
Number of Sequences: 1393205
Number of extensions: 8427383
Number of successful extensions: 18264
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 17853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18241
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
