Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002359A_C01 KMC002359A_c01
(877 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12180 probable transcription factor - fava bean gi|2104681... 238 9e-62
gb|AAF14245.1|AF110229_1 nuclear RNA binding protein B [Spinacia... 198 1e-49
dbj|BAB78636.1| P0681B11.2 [Oryza sativa (japonica cultivar-grou... 193 3e-48
gb|AAF14244.1|AF110228_1 nuclear RNA binding protein A [Spinacia... 190 2e-47
ref|NP_193416.1| nuclear antigen homolog; protein id: At4g16830.... 189 6e-47
>pir||T12180 probable transcription factor - fava bean
gi|2104681|emb|CAA66481.1| transcription factor [Vicia
faba]
Length = 370
Score = 238 bits (607), Expect = 9e-62
Identities = 124/170 (72%), Positives = 143/170 (83%), Gaps = 4/170 (2%)
Frame = -1
Query: 853 EELGDEKPATEEKEAAYGNKESPVNESEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEV 674
+ GDEKPA E + A GNK++P NE+EEKEPEDKEMTLEEYEK+LEEKRKALQALKTE
Sbjct: 203 KNFGDEKPAAEN-DVAEGNKDTPANEAEEKEPEDKEMTLEEYEKLLEEKRKALQALKTEE 261
Query: 673 RKVDAKEFESMQPLSHKKDNDEIFAKLGSDKDKRRDAIEK-EKSKKSVSINEFLKPAEGE 497
RKVD KEFE+MQ LS KKDN EIFAKLGSDKDKR++A +K EK+KKSVSINEFLKPAEGE
Sbjct: 262 RKVDTKEFETMQALSCKKDNFEIFAKLGSDKDKRKEAFDKEEKAKKSVSINEFLKPAEGE 321
Query: 496 RYYSP---GGRGRGRGSRGGSRGGFSGNASNHAAAPAIQDPSHFPTLGGK 356
YY+ GGRGRGRG+RGG GGF GN++++ AP+I+DP HFPTLG K
Sbjct: 322 GYYNQGGRGGRGRGRGTRGGF-GGFRGNSTSNVPAPSIEDPGHFPTLGAK 370
>gb|AAF14245.1|AF110229_1 nuclear RNA binding protein B [Spinacia oleracea]
Length = 240
Score = 198 bits (503), Expect = 1e-49
Identities = 108/161 (67%), Positives = 124/161 (76%), Gaps = 4/161 (2%)
Frame = -1
Query: 826 TEEKEAAYGNKESPVNESEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEVRKVDA-KEF 650
T ++AA GNKE E+EEKEPE+KEMTLEEYEK+LEEKRKAL ALK+E KV KE
Sbjct: 83 TAVEDAAVGNKEGQPEEAEEKEPEEKEMTLEEYEKLLEEKRKALLALKSEEPKVVVDKEL 142
Query: 649 ESMQPLSHKKDNDEIFAKLGSDKDKRRDAIEKEKSKKSVSINEFLKPAEGERYYSPGGRG 470
ESMQ LS ++D+ +F KLGSDKDK+++A+EKEK KKSVSINEFLKPAEGER+ GGRG
Sbjct: 143 ESMQQLSKQQDDSSVFIKLGSDKDKKKEALEKEKVKKSVSINEFLKPAEGERF---GGRG 199
Query: 469 R---GRGSRGGSRGGFSGNASNHAAAPAIQDPSHFPTLGGK 356
R GRGSRGG GG GN + A APAI DP FPTLGGK
Sbjct: 200 RGRGGRGSRGGEYGGGGGNRTYSAPAPAIGDPGEFPTLGGK 240
>dbj|BAB78636.1| P0681B11.2 [Oryza sativa (japonica cultivar-group)]
gi|20161049|dbj|BAB89981.1| putative putative nuclear
RNA binding protein A [Oryza sativa (japonica
cultivar-group)]
Length = 355
Score = 193 bits (490), Expect = 3e-48
Identities = 105/170 (61%), Positives = 127/170 (73%), Gaps = 4/170 (2%)
Frame = -1
Query: 853 EELGDEKPATEEKEAAYGNKESPVNESEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEV 674
E ++ P ++E E +KE NE EEKEPEDKEMTLEEYEKVLEEKRKAL +LK E
Sbjct: 186 ENKQEDVPQSDEVEK---HKEGESNEEEEKEPEDKEMTLEEYEKVLEEKRKALLSLKVEE 242
Query: 673 RKVDA-KEFESMQPLSHKKDNDEIFAKLGSDKDKRRDAIEK-EKSKKSVSINEFLKPAEG 500
RKV KE +SMQ LS KKD+DE+F KLGSDKDK+++ +E+ E+++KS+SINEFLKPAEG
Sbjct: 243 RKVVVDKELQSMQQLSVKKDSDEVFIKLGSDKDKKKENVERDERTRKSLSINEFLKPAEG 302
Query: 499 ERYYSPGGRGRGRGSRGGSRGGFSGNASNH--AAAPAIQDPSHFPTLGGK 356
ERYYSPGGRGRGRG G RGGF S+ AAP I+D + FP L G+
Sbjct: 303 ERYYSPGGRGRGRGRGRGDRGGFRDGYSSRGPVAAPRIEDQAQFPGLAGR 352
>gb|AAF14244.1|AF110228_1 nuclear RNA binding protein A [Spinacia oleracea]
Length = 356
Score = 190 bits (483), Expect = 2e-47
Identities = 108/165 (65%), Positives = 127/165 (76%), Gaps = 4/165 (2%)
Frame = -1
Query: 838 EKPATEEKEAAYGNKESPVNESEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEVRKVDA 659
EKPA EE A KE+P E+EE EPE+K+MTLEEYEKVLEEKRKAL ALK E RKVD
Sbjct: 195 EKPAGEE--VADAGKENPEKEAEEVEPEEKQMTLEEYEKVLEEKRKALLALKAEERKVDV 252
Query: 658 -KEFESMQPLSHKKDNDEIFAKLGSDKDKRRDAIEK-EKSKKSVSINEFLKPAE-GERYY 488
K+FESMQ + KK +DE+F +L SDKDK+++A EK EK+KKSVSINEFL+PAE G++Y
Sbjct: 253 DKDFESMQLKTKKKVDDEVFIQLNSDKDKKKEAAEKEEKAKKSVSINEFLRPAEGGDQYQ 312
Query: 487 SPGGRGR-GRGSRGGSRGGFSGNASNHAAAPAIQDPSHFPTLGGK 356
GGRGR GRG RGG+ GG G NHA AP I+DP+ FPTLGGK
Sbjct: 313 RRGGRGRGGRGGRGGNGGG--GYGMNHATAPKIEDPNQFPTLGGK 355
>ref|NP_193416.1| nuclear antigen homolog; protein id: At4g16830.1, supported by
cDNA: 118826., supported by cDNA: gi_17380879, supported
by cDNA: gi_20465928 [Arabidopsis thaliana]
gi|7488137|pir||F71435 probable nuclear antigen -
Arabidopsis thaliana gi|2245037|emb|CAB10456.1| nuclear
antigen homolog [Arabidopsis thaliana]
gi|6492264|gb|AAF14243.1|AF110227_1 nuclear RNA binding
protein [Arabidopsis thaliana]
gi|7268434|emb|CAB80954.1| nuclear antigen homolog
[Arabidopsis thaliana] gi|17380880|gb|AAL36252.1|
putative nuclear antigen homolog [Arabidopsis thaliana]
gi|20465929|gb|AAM20150.1| putative nuclear antigen-like
protein [Arabidopsis thaliana]
gi|22022571|gb|AAM83242.1| AT4g16830/dl4440w
[Arabidopsis thaliana] gi|23308317|gb|AAN18128.1|
At4g16830/dl4440w [Arabidopsis thaliana]
Length = 355
Score = 189 bits (479), Expect = 6e-47
Identities = 108/164 (65%), Positives = 123/164 (74%), Gaps = 3/164 (1%)
Frame = -1
Query: 838 EKPATEEKEAAYGNKESPVNESEEKEPEDKEMTLEEYEKVLEEKRKALQALKTEVRKVDA 659
EKPA ++ AA NKE V EEKEPEDKEMTL+EYEK+LEEK+KALQ+L T RKVD
Sbjct: 198 EKPAVDDV-AADANKEDTV--VEEKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDT 254
Query: 658 KEFESMQPLSHKKDNDEIFAKLGSDKDKRRDAIEKEKSKKSVSINEFLKPAEGERYYSPG 479
K FESMQ LS+KK NDEIF KLGSDKDKR+D ++EK+KK+VSINEFLKPAEG YY G
Sbjct: 255 KVFESMQQLSNKKSNDEIFIKLGSDKDKRKDD-KEEKAKKAVSINEFLKPAEGGNYYRGG 313
Query: 478 GRGRGRGSRGGSRGGFSGNAS---NHAAAPAIQDPSHFPTLGGK 356
GRGRG RG RGG S S + AAPAI D + FP+LGGK
Sbjct: 314 RGGRGRGGRG--RGGVSSGESGGYRNEAAPAIGDAAQFPSLGGK 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 805,266,490
Number of Sequences: 1393205
Number of extensions: 19392435
Number of successful extensions: 138413
Number of sequences better than 10.0: 1709
Number of HSP's better than 10.0 without gapping: 92458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128536
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47103382053
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
