Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002352A_C01 KMC002352A_c01
(822 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN72051.1| cell cycle control crn (crooked neck) protein-lik... 335 5e-91
ref|NP_199411.1| CRN (crooked neck) protein; protein id: At5g459... 314 9e-85
dbj|BAB01413.1| probable cell cycle control protein; crooked nec... 302 3e-81
ref|NP_187927.1| crn-like protein; protein id: At3g13210.1 [Arab... 302 3e-81
ref|NP_198992.1| cell cycle control crn (crooked neck) protein-l... 274 1e-72
>gb|AAN72051.1| cell cycle control crn (crooked neck) protein-like [Arabidopsis
thaliana]
Length = 705
Score = 335 bits (859), Expect = 5e-91
Identities = 156/185 (84%), Positives = 174/185 (93%)
Frame = -3
Query: 805 DYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTR 626
DY+RLEESVGNK+R+R++YERAIANVPPAEEK YWQRYIYLWINYAL+EE++ D+ERTR
Sbjct: 346 DYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTR 405
Query: 625 EVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIEI 446
+VY+ECL LIPH KFSFAK+WLLAAQFEIRQLNL GAR ILGNAIGKAPKDKIFKKYIEI
Sbjct: 406 DVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEI 465
Query: 445 ELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFELAIAQPASDMP 266
ELQLGN+DRCRKLYE+YLEW+PENCYAWSKYA LERSL ET+RAR+IFELAI+QPA DMP
Sbjct: 466 ELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPALDMP 525
Query: 265 ELCWK 251
EL WK
Sbjct: 526 ELLWK 530
Score = 65.5 bits (158), Expect = 9e-10
Identities = 51/185 (27%), Positives = 86/185 (45%), Gaps = 11/185 (5%)
Frame = -3
Query: 808 VDYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERT 629
+ +I+ E ER R +YER + P + +I YA +E + G+V R
Sbjct: 197 LSFIKFELRYNEIERARTIYERFVLCHPK----------VSAYIRYAKFE-MKGGEVARC 245
Query: 628 REVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDK---IFKK 458
R VY+ + + + +++ A+FE R ++ AR I A+ PK + +++K
Sbjct: 246 RSVYERATEKLADDEEAEI-LFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYRK 304
Query: 457 YIEIELQLGN--------IDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIF 302
++ E Q G+ + + R YE + +P N +W Y LE S+ DR R I+
Sbjct: 305 FVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIY 364
Query: 301 ELAIA 287
E AIA
Sbjct: 365 ERAIA 369
Score = 63.9 bits (154), Expect = 3e-09
Identities = 52/179 (29%), Positives = 82/179 (45%)
Frame = -3
Query: 808 VDYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERT 629
V Y + EES + R R V+ERAI R LW+ YA + E+ V
Sbjct: 96 VKYAQWEESQKDYARARSVWERAIEGD---------YRNHTLWLKYAEF-EMKNKFVNSA 145
Query: 628 REVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIE 449
R V+ + L+P ++W E N+ GAR I + +P + + +I+
Sbjct: 146 RNVWDRAVTLLPR----VDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWLSFIK 201
Query: 448 IELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFELAIAQPASD 272
EL+ I+R R +YE+++ P+ A+ +YA E E R RS++E A + A D
Sbjct: 202 FELRYNEIERARTIYERFVLCHPK-VSAYIRYAKFEMKGGEVARCRSVYERATEKLADD 259
Score = 60.5 bits (145), Expect = 3e-08
Identities = 41/160 (25%), Positives = 80/160 (49%), Gaps = 3/160 (1%)
Frame = -3
Query: 760 RDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTREVYKECLNLIPHKKF 581
R+V++RA+ +P ++ LW Y EE+ G++ R++++ ++ P ++
Sbjct: 146 RNVWDRAVTLLPRVDQ---------LWYKYIHMEEI-LGNIAGARQIFERWMDWSPDQQG 195
Query: 580 SFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYE 401
WL +FE+R ++ AR I + PK + +Y + E++ G + RCR +YE
Sbjct: 196 -----WLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIRYAKFEMKGGEVARCRSVYE 250
Query: 400 KYLEWAPENCYA---WSKYA*LERSLSETDRARSIFELAI 290
+ E ++ A + +A E E +RAR I++ A+
Sbjct: 251 RATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFAL 290
Score = 52.0 bits (123), Expect = 1e-05
Identities = 50/197 (25%), Positives = 87/197 (43%), Gaps = 25/197 (12%)
Frame = -3
Query: 775 NKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTREVYKECLNLI 596
N R + AI P ++K++ ++YI + EL G+++R R++Y+ L
Sbjct: 438 NLTGARQILGNAIGKAP--KDKIF-KKYIEI--------ELQLGNMDRCRKLYERYLEWS 486
Query: 595 PHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDK---IFKKYIEIELQLGNI 425
P ++++K A+ E + + AR I AI + D ++K YI+ E+ G +
Sbjct: 487 PENCYAWSKY----AELERSLVETERARAIFELAISQPALDMPELLWKAYIDFEISEGEL 542
Query: 424 DRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETD----------------------RAR 311
+R R LYE+ L+ ++ W +A E S +E + RAR
Sbjct: 543 ERTRALYERLLD-RTKHYKVWVSFAKFEASAAELEEDENEDEDQEEDVIEHKKDCIKRAR 601
Query: 310 SIFELAIAQPASDMPEL 260
+IF+ A PEL
Sbjct: 602 AIFDRANTYYKDSTPEL 618
Score = 40.0 bits (92), Expect = 0.042
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = -3
Query: 571 KMWLLAAQFEIRQLNLKGARLILGNAI-GKAPKDKIFKKYIEIELQLGNIDRCRKLYEKY 395
++W+ AQ+E Q + AR + AI G ++ KY E E++ ++ R ++++
Sbjct: 93 QVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRA 152
Query: 394 LEWAPENCYAWSKYA*LERSLSETDRARSIFE 299
+ P W KY +E L AR IFE
Sbjct: 153 VTLLPRVDQLWYKYIHMEEILGNIAGARQIFE 184
Score = 33.1 bits (74), Expect = 5.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3
Query: 421 RCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFELAI 290
R RK +E + A N W KYA E S + RARS++E AI
Sbjct: 76 RRRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAI 119
>ref|NP_199411.1| CRN (crooked neck) protein; protein id: At5g45990.1 [Arabidopsis
thaliana] gi|9757719|dbj|BAB08244.1| CRN (crooked neck)
protein [Arabidopsis thaliana]
Length = 673
Score = 314 bits (805), Expect = 9e-85
Identities = 146/185 (78%), Positives = 169/185 (90%)
Frame = -3
Query: 805 DYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTR 626
DY+RLEESVGNK+R+R++YERAIANVPPA+EK +WQRYIYLWINYALYEE++ DVERTR
Sbjct: 333 DYVRLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVERTR 392
Query: 625 EVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIEI 446
+VY+ECL LIPH KFSFAK+WLLAA++EIRQLNL GAR ILGNAIGKAPK KIFKKYIE+
Sbjct: 393 DVYRECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVKIFKKYIEM 452
Query: 445 ELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFELAIAQPASDMP 266
EL+L NIDRCRKLYE++LEW+PENCYAW YA E SL+ET+RAR+IFELAI+QPA DMP
Sbjct: 453 ELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAISQPALDMP 512
Query: 265 ELCWK 251
EL WK
Sbjct: 513 ELLWK 517
Score = 72.8 bits (177), Expect = 6e-12
Identities = 40/132 (30%), Positives = 76/132 (57%), Gaps = 1/132 (0%)
Frame = -3
Query: 691 IYLWINYALYEELDAGDVERTREVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGAR 512
I +W+ YA +EE D R R V++ L ++ +W+ A+FE++ + AR
Sbjct: 78 IQVWVKYAKWEESQM-DYARARSVWERALE----GEYRNHTLWVKYAEFEMKNKFVNNAR 132
Query: 511 LILGNAIGKAPK-DKIFKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LERS 335
+ ++ P+ D++++KYI +E +LGN+ R+++E+++ W+P+ AW + E
Sbjct: 133 NVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQ-KAWLCFIKFELR 191
Query: 334 LSETDRARSIFE 299
+E +RARSI+E
Sbjct: 192 YNEIERARSIYE 203
Score = 65.5 bits (158), Expect = 9e-10
Identities = 53/195 (27%), Positives = 89/195 (45%), Gaps = 11/195 (5%)
Frame = -3
Query: 802 YIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTRE 623
+I+ E ER R +YER + P + +I YA +E G V+ RE
Sbjct: 185 FIKFELRYNEIERARSIYERFVLCHPK----------VSAFIRYAKFEMKRGGQVKLARE 234
Query: 622 VYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNA---IGKAPKDKIFKKYI 452
VY+ ++ + + + + +++ A+FE R ++ AR I A I K ++++KK++
Sbjct: 235 VYERAVDKLANDEEAEI-LFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKFV 293
Query: 451 EIELQLGN--------IDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFEL 296
E Q G+ + + R YE + P N +W Y LE S+ DR R I+E
Sbjct: 294 AFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYER 353
Query: 295 AIAQPASDMPELCWK 251
AIA + W+
Sbjct: 354 AIANVPPAQEKRFWQ 368
Score = 60.5 bits (145), Expect = 3e-08
Identities = 50/180 (27%), Positives = 85/180 (46%), Gaps = 1/180 (0%)
Frame = -3
Query: 808 VDYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERT 629
V Y + EES + R R V+ERA+ R LW+ YA +E + V
Sbjct: 82 VKYAKWEESQMDYARARSVWERALEGE---------YRNHTLWVKYAEFE-MKNKFVNNA 131
Query: 628 REVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIE 449
R V+ + L+P ++W E + N+ GAR I + +P K + +I+
Sbjct: 132 RNVWDRSVTLLPRVD----QLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQKAWLCFIK 187
Query: 448 IELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LE-RSLSETDRARSIFELAIAQPASD 272
EL+ I+R R +YE+++ P+ A+ +YA E + + AR ++E A+ + A+D
Sbjct: 188 FELRYNEIERARSIYERFVLCHPK-VSAFIRYAKFEMKRGGQVKLAREVYERAVDKLAND 246
>dbj|BAB01413.1| probable cell cycle control protein; crooked neck-like protein
[Arabidopsis thaliana]
Length = 675
Score = 302 bits (774), Expect = 3e-81
Identities = 143/187 (76%), Positives = 163/187 (86%), Gaps = 2/187 (1%)
Frame = -3
Query: 805 DYIRLEESVGNKERVRDVYERAIANVPP--AEEKLYWQRYIYLWINYALYEELDAGDVER 632
D++RLEE+VGNK+R+R++YERA+ANVPP A+EK YWQRYIYLWINYA + E+ DVE
Sbjct: 319 DFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVES 378
Query: 631 TREVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYI 452
TR+VY+ CL LIPH KFSFAK+WLLAAQ EIRQLNL GAR ILGNAIGKAPKDKIFKKYI
Sbjct: 379 TRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKAPKDKIFKKYI 438
Query: 451 EIELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFELAIAQPASD 272
EIELQL NIDRCRKLYE+YLEW+P NCYAW KYA E SL+ET+R R+IFELAI+QPA D
Sbjct: 439 EIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALD 498
Query: 271 MPELCWK 251
MPEL WK
Sbjct: 499 MPELLWK 505
Score = 54.7 bits (130), Expect = 2e-06
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 20/192 (10%)
Frame = -3
Query: 775 NKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTREVYKECLNLI 596
N R + AI P ++K++ ++YI + EL +++R R++Y+ L
Sbjct: 413 NLTGARQILGNAIGKAP--KDKIF-KKYIEI--------ELQLRNIDRCRKLYERYLEWS 461
Query: 595 PHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDK---IFKKYIEIELQLGNI 425
P ++ W A+FE+ + R I AI + D ++K YI+ E+ G +
Sbjct: 462 PGNCYA----WRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGEL 517
Query: 424 DRCRKLYEKYLEWAPENCYAWSKYA*LERSLSE-----------------TDRARSIFEL 296
+R R LYE+ L+ ++C W +A E S +E RAR IF+
Sbjct: 518 ERTRALYERLLD-RTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDR 576
Query: 295 AIAQPASDMPEL 260
A PEL
Sbjct: 577 ANTYNKDSTPEL 588
Score = 50.1 bits (118), Expect = 4e-05
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Frame = -3
Query: 685 LWINYALYEELDAGDVERTREV------------------YKECLNLIPHKKFSFAKMWL 560
+W+ YA +EE D+ER R V + ++L+P ++W
Sbjct: 93 VWVRYAQWEESQM-DLERARSVKYADFEMKNKSVNEARNVWDRAVSLLPRVD----QLWY 147
Query: 559 LAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWAP 380
E + N+ GAR IL I +P + + +I+ EL+ I+ R +YE+++ P
Sbjct: 148 KFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKFELKYNEIECARSIYERFVLCHP 207
Query: 379 ENCYAWSKYA*LERSLSETDRARSIFELAIAQPASD 272
+ A+ +YA E + + A +FE A + A D
Sbjct: 208 K-VSAYIRYAKFEMKHGQVELAMKVFERAKKELADD 242
Score = 43.9 bits (102), Expect = 0.003
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 35/207 (16%)
Frame = -3
Query: 802 YIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTRE 623
+I +EE +GN R + ER I P + L + ++ EL ++E R
Sbjct: 149 FIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKF-----------ELKYNEIECARS 197
Query: 622 VYKECLNLIPHKKFS----FAKMWLLAAQFEIRQLNLKGARLILGN-------------- 497
+Y+ ++ H K S +AK + Q E+ + A+ L +
Sbjct: 198 IYERF--VLCHPKVSAYIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEF 255
Query: 496 ------AIGKAPK---DKIFKKYIEIELQLGN--------IDRCRKLYEKYLEWAPENCY 368
A+ + PK + ++ K++ E Q G+ I + R YE + P N
Sbjct: 256 EEQYKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYD 315
Query: 367 AWSKYA*LERSLSETDRARSIFELAIA 287
+W + LE ++ DR R I+E A+A
Sbjct: 316 SWFDFVRLEETVGNKDRIREIYERAVA 342
Score = 36.2 bits (82), Expect = 0.60
Identities = 24/106 (22%), Positives = 46/106 (42%)
Frame = -3
Query: 571 KMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYL 392
++W+ AQ+E Q++L+ AR + KY + E++ +++ R ++++ +
Sbjct: 92 QVWVRYAQWEESQMDLERARSV---------------KYADFEMKNKSVNEARNVWDRAV 136
Query: 391 EWAPENCYAWSKYA*LERSLSETDRARSIFELAIAQPASDMPELCW 254
P W K+ +E L AR I E I LC+
Sbjct: 137 SLLPRVDQLWYKFIHMEEKLGNIAGARQILERWIHCSPDQQAWLCF 182
>ref|NP_187927.1| crn-like protein; protein id: At3g13210.1 [Arabidopsis thaliana]
Length = 657
Score = 302 bits (774), Expect = 3e-81
Identities = 143/187 (76%), Positives = 163/187 (86%), Gaps = 2/187 (1%)
Frame = -3
Query: 805 DYIRLEESVGNKERVRDVYERAIANVPP--AEEKLYWQRYIYLWINYALYEELDAGDVER 632
D++RLEE+VGNK+R+R++YERA+ANVPP A+EK YWQRYIYLWINYA + E+ DVE
Sbjct: 301 DFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVES 360
Query: 631 TREVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYI 452
TR+VY+ CL LIPH KFSFAK+WLLAAQ EIRQLNL GAR ILGNAIGKAPKDKIFKKYI
Sbjct: 361 TRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNAIGKAPKDKIFKKYI 420
Query: 451 EIELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFELAIAQPASD 272
EIELQL NIDRCRKLYE+YLEW+P NCYAW KYA E SL+ET+R R+IFELAI+QPA D
Sbjct: 421 EIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALD 480
Query: 271 MPELCWK 251
MPEL WK
Sbjct: 481 MPELLWK 487
Score = 54.7 bits (130), Expect = 2e-06
Identities = 50/192 (26%), Positives = 83/192 (43%), Gaps = 20/192 (10%)
Frame = -3
Query: 775 NKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTREVYKECLNLI 596
N R + AI P ++K++ ++YI + EL +++R R++Y+ L
Sbjct: 395 NLTGARQILGNAIGKAP--KDKIF-KKYIEI--------ELQLRNIDRCRKLYERYLEWS 443
Query: 595 PHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDK---IFKKYIEIELQLGNI 425
P ++ W A+FE+ + R I AI + D ++K YI+ E+ G +
Sbjct: 444 PGNCYA----WRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGEL 499
Query: 424 DRCRKLYEKYLEWAPENCYAWSKYA*LERSLSE-----------------TDRARSIFEL 296
+R R LYE+ L+ ++C W +A E S +E RAR IF+
Sbjct: 500 ERTRALYERLLD-RTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERKKDGIKRAREIFDR 558
Query: 295 AIAQPASDMPEL 260
A PEL
Sbjct: 559 ANTYNKDSTPEL 570
Score = 53.9 bits (128), Expect = 3e-06
Identities = 37/138 (26%), Positives = 67/138 (47%)
Frame = -3
Query: 685 LWINYALYEELDAGDVERTREVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLI 506
+W+ YA +E + V R V+ ++L+P ++W E + N+ GAR I
Sbjct: 93 VWVKYADFE-MKNKSVNEARNVWDRAVSLLPRVD----QLWYKFIHMEEKLGNIAGARQI 147
Query: 505 LGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSE 326
L I +P + + +I+ EL+ I+ R +YE+++ P+ A+ +YA E +
Sbjct: 148 LERWIHCSPDQQAWLCFIKFELKYNEIECARSIYERFVLCHPK-VSAYIRYAKFEMKHGQ 206
Query: 325 TDRARSIFELAIAQPASD 272
+ A +FE A + A D
Sbjct: 207 VELAMKVFERAKKELADD 224
Score = 52.8 bits (125), Expect = 6e-06
Identities = 28/92 (30%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Frame = -3
Query: 571 KMWLLAAQFEIRQLNLKGARLILGNAIGKAPK-DKIFKKYIEIELQLGNIDRCRKLYEKY 395
++W+ A FE++ ++ AR + A+ P+ D+++ K+I +E +LGNI R++ E++
Sbjct: 92 QVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILERW 151
Query: 394 LEWAPENCYAWSKYA*LERSLSETDRARSIFE 299
+ +P+ AW + E +E + ARSI+E
Sbjct: 152 IHCSPDQ-QAWLCFIKFELKYNEIECARSIYE 182
Score = 43.9 bits (102), Expect = 0.003
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 35/207 (16%)
Frame = -3
Query: 802 YIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTRE 623
+I +EE +GN R + ER I P + L + ++ EL ++E R
Sbjct: 131 FIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKF-----------ELKYNEIECARS 179
Query: 622 VYKECLNLIPHKKFS----FAKMWLLAAQFEIRQLNLKGARLILGN-------------- 497
+Y+ ++ H K S +AK + Q E+ + A+ L +
Sbjct: 180 IYERF--VLCHPKVSAYIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEF 237
Query: 496 ------AIGKAPK---DKIFKKYIEIELQLGN--------IDRCRKLYEKYLEWAPENCY 368
A+ + PK + ++ K++ E Q G+ I + R YE + P N
Sbjct: 238 EEQYKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYD 297
Query: 367 AWSKYA*LERSLSETDRARSIFELAIA 287
+W + LE ++ DR R I+E A+A
Sbjct: 298 SWFDFVRLEETVGNKDRIREIYERAVA 324
>ref|NP_198992.1| cell cycle control crn (crooked neck) protein-like; protein id:
At5g41770.1 [Arabidopsis thaliana]
gi|10177361|dbj|BAB10652.1| cell cycle control crn
(crooked neck) protein-like [Arabidopsis thaliana]
Length = 665
Score = 274 bits (701), Expect = 1e-72
Identities = 134/185 (72%), Positives = 150/185 (80%)
Frame = -3
Query: 805 DYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTR 626
DY+RLEESVGNK+R+R++YERAIANVPPAEEK YWQRYIYLWINYAL+EE++ D+ERTR
Sbjct: 332 DYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTR 391
Query: 625 EVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIEI 446
+VY RQLNL GAR ILGNAIGKAPKDKIFKKYIEI
Sbjct: 392 DVY--------------------------RQLNLTGARQILGNAIGKAPKDKIFKKYIEI 425
Query: 445 ELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFELAIAQPASDMP 266
ELQLGN+DRCRKLYE+YLEW+PENCYAWSKYA LERSL ET+RAR+IFELAI+QPA DMP
Sbjct: 426 ELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPALDMP 485
Query: 265 ELCWK 251
EL WK
Sbjct: 486 ELLWK 490
Score = 65.5 bits (158), Expect = 9e-10
Identities = 51/185 (27%), Positives = 86/185 (45%), Gaps = 11/185 (5%)
Frame = -3
Query: 808 VDYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERT 629
+ +I+ E ER R +YER + P + +I YA +E + G+V R
Sbjct: 183 LSFIKFELRYNEIERARTIYERFVLCHPK----------VSAYIRYAKFE-MKGGEVARC 231
Query: 628 REVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDK---IFKK 458
R VY+ + + + +++ A+FE R ++ AR I A+ PK + +++K
Sbjct: 232 RSVYERATEKLADDEEAEI-LFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYRK 290
Query: 457 YIEIELQLGN--------IDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIF 302
++ E Q G+ + + R YE + +P N +W Y LE S+ DR R I+
Sbjct: 291 FVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIY 350
Query: 301 ELAIA 287
E AIA
Sbjct: 351 ERAIA 355
Score = 63.9 bits (154), Expect = 3e-09
Identities = 52/179 (29%), Positives = 82/179 (45%)
Frame = -3
Query: 808 VDYIRLEESVGNKERVRDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERT 629
V Y + EES + R R V+ERAI R LW+ YA + E+ V
Sbjct: 82 VKYAQWEESQKDYARARSVWERAIEGD---------YRNHTLWLKYAEF-EMKNKFVNSA 131
Query: 628 REVYKECLNLIPHKKFSFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIE 449
R V+ + L+P ++W E N+ GAR I + +P + + +I+
Sbjct: 132 RNVWDRAVTLLPR----VDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWLSFIK 187
Query: 448 IELQLGNIDRCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFELAIAQPASD 272
EL+ I+R R +YE+++ P+ A+ +YA E E R RS++E A + A D
Sbjct: 188 FELRYNEIERARTIYERFVLCHPK-VSAYIRYAKFEMKGGEVARCRSVYERATEKLADD 245
Score = 60.5 bits (145), Expect = 3e-08
Identities = 41/160 (25%), Positives = 80/160 (49%), Gaps = 3/160 (1%)
Frame = -3
Query: 760 RDVYERAIANVPPAEEKLYWQRYIYLWINYALYEELDAGDVERTREVYKECLNLIPHKKF 581
R+V++RA+ +P ++ LW Y EE+ G++ R++++ ++ P ++
Sbjct: 132 RNVWDRAVTLLPRVDQ---------LWYKYIHMEEI-LGNIAGARQIFERWMDWSPDQQG 181
Query: 580 SFAKMWLLAAQFEIRQLNLKGARLILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYE 401
WL +FE+R ++ AR I + PK + +Y + E++ G + RCR +YE
Sbjct: 182 -----WLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIRYAKFEMKGGEVARCRSVYE 236
Query: 400 KYLEWAPENCYA---WSKYA*LERSLSETDRARSIFELAI 290
+ E ++ A + +A E E +RAR I++ A+
Sbjct: 237 RATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFAL 276
Score = 40.0 bits (92), Expect = 0.042
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = -3
Query: 571 KMWLLAAQFEIRQLNLKGARLILGNAI-GKAPKDKIFKKYIEIELQLGNIDRCRKLYEKY 395
++W+ AQ+E Q + AR + AI G ++ KY E E++ ++ R ++++
Sbjct: 79 QVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRA 138
Query: 394 LEWAPENCYAWSKYA*LERSLSETDRARSIFE 299
+ P W KY +E L AR IFE
Sbjct: 139 VTLLPRVDQLWYKYIHMEEILGNIAGARQIFE 170
Score = 33.1 bits (74), Expect = 5.1
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = -3
Query: 421 RCRKLYEKYLEWAPENCYAWSKYA*LERSLSETDRARSIFELAI 290
R RK +E + A N W KYA E S + RARS++E AI
Sbjct: 62 RRRKEFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAI 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 647,042,664
Number of Sequences: 1393205
Number of extensions: 13209503
Number of successful extensions: 33917
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 32131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33632
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42576939184
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
