Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002340A_C01 KMC002340A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD27569.1|AF114171_10 hypothetical protein [Sorghum bicolor] 96 4e-32
pir||T51362 phosphoserine phosphatase (EC 3.1.3.3) precursor, ch... 112 3e-24
ref|NP_173299.1| 3-phosphoserine phosphatase; protein id: At1g18... 112 3e-24
gb|AAF14696.1|AF191498_1 O-phosphoserine phosphohydrolase Astray... 74 1e-12
ref|NP_524001.2| astray CG3705-PA gi|7294945|gb|AAF50274.1| CG37... 74 1e-12
>gb|AAD27569.1|AF114171_10 hypothetical protein [Sorghum bicolor]
Length = 236
Score = 96.3 bits (238), Expect(2) = 4e-32
Identities = 50/80 (62%), Positives = 56/80 (69%), Gaps = 13/80 (16%)
Frame = -3
Query: 602 LGIPQENIFANQLLFGSSGDFLGFDENEPTSRSGGKASAVQKIKKA-------------R 462
LGIP ENI ANQLLFG+SG++ GFD EPTSRSGGKA AVQKIK+
Sbjct: 120 LGIPPENITANQLLFGTSGEYAGFDPTEPTSRSGGKAKAVQKIKQLFTTSALTFVSVQDH 179
Query: 461 GYKTLTMVGDGATDFEARGP 402
GYKT+ M+GDGATD EAR P
Sbjct: 180 GYKTVVMIGDGATDLEARQP 199
Score = 63.9 bits (154), Expect(2) = 4e-32
Identities = 28/37 (75%), Positives = 34/37 (91%)
Frame = -1
Query: 403 PGGANLFICYAGVQLREAVAAKADWLVFDFKDLISSL 293
PGGA+LFICYAGVQ+RE VAA ADW+VFDF++LI+ L
Sbjct: 199 PGGADLFICYAGVQMREPVAALADWVVFDFQELITKL 235
>pir||T51362 phosphoserine phosphatase (EC 3.1.3.3) precursor, chloroplast
[validated] - Arabidopsis thaliana
gi|3759177|dbj|BAA33806.1| 3-phosphoserine phosphatase
[Arabidopsis thaliana] gi|3759179|dbj|BAA33807.1|
3-phosphoserin phosphatase [Arabidopsis thaliana]
Length = 295
Score = 112 bits (281), Expect = 3e-24
Identities = 53/67 (79%), Positives = 60/67 (89%)
Frame = -3
Query: 602 LGIPQENIFANQLLFGSSGDFLGFDENEPTSRSGGKASAVQKIKKARGYKTLTMVGDGAT 423
LGIP+ENIFAN LLFG+SG+FLGFDENEPTSRSGGKA AVQ+I+K R YKT+ M+GDGAT
Sbjct: 192 LGIPRENIFANNLLFGNSGEFLGFDENEPTSRSGGKAKAVQQIRKGRLYKTMAMIGDGAT 251
Query: 422 DFEARGP 402
D EAR P
Sbjct: 252 DLEARKP 258
Score = 65.5 bits (158), Expect = 5e-10
Identities = 39/74 (52%), Positives = 46/74 (61%)
Frame = -1
Query: 514 RQGVEEKLLQSKKSKRLVDTKH*RW*GTVQLILRHVDPGGANLFICYAGVQLREAVAAKA 335
R G + K +Q + RL T G L R PGGA+LFI YAGVQLREAVAA A
Sbjct: 223 RSGGKAKAVQQIRKGRLYKTMAMIGDGATDLEARK--PGGADLFISYAGVQLREAVAANA 280
Query: 334 DWLVFDFKDLISSL 293
DWL+F F+ LI+SL
Sbjct: 281 DWLIFKFESLINSL 294
>ref|NP_173299.1| 3-phosphoserine phosphatase; protein id: At1g18640.1, supported by
cDNA: 34821., supported by cDNA: gi_17529131, supported
by cDNA: gi_20465704, supported by cDNA: gi_3759176
[Arabidopsis thaliana] gi|25402864|pir||B86320
3-phosphoserine phosphatase [imported] - Arabidopsis
thaliana gi|9795592|gb|AAF98410.1|AC026238_2
3-phosphoserine phosphatase [Arabidopsis thaliana]
gi|17529132|gb|AAL38792.1| putative 3-phosphoserine
phosphatase [Arabidopsis thaliana]
gi|20465705|gb|AAM20321.1| putative 3-phosphoserine
phosphatase [Arabidopsis thaliana]
gi|21592986|gb|AAM64935.1| 3-phosphoserine phosphatase
[Arabidopsis thaliana]
Length = 295
Score = 112 bits (281), Expect = 3e-24
Identities = 53/67 (79%), Positives = 60/67 (89%)
Frame = -3
Query: 602 LGIPQENIFANQLLFGSSGDFLGFDENEPTSRSGGKASAVQKIKKARGYKTLTMVGDGAT 423
LGIP+ENIFAN LLFG+SG+FLGFDENEPTSRSGGKA AVQ+I+K R YKT+ M+GDGAT
Sbjct: 192 LGIPRENIFANNLLFGNSGEFLGFDENEPTSRSGGKAKAVQQIRKGRLYKTMAMIGDGAT 251
Query: 422 DFEARGP 402
D EAR P
Sbjct: 252 DLEARKP 258
Score = 69.3 bits (168), Expect = 4e-11
Identities = 40/74 (54%), Positives = 47/74 (63%)
Frame = -1
Query: 514 RQGVEEKLLQSKKSKRLVDTKH*RW*GTVQLILRHVDPGGANLFICYAGVQLREAVAAKA 335
R G + K +Q + RL T G L R PGGA+LFICYAGVQLREAVAA A
Sbjct: 223 RSGGKAKAVQQIRKGRLYKTMAMIGDGATDLEARK--PGGADLFICYAGVQLREAVAANA 280
Query: 334 DWLVFDFKDLISSL 293
DWL+F F+ LI+SL
Sbjct: 281 DWLIFKFESLINSL 294
>gb|AAF14696.1|AF191498_1 O-phosphoserine phosphohydrolase Astray [Drosophila melanogaster]
Length = 270
Score = 73.9 bits (180), Expect = 1e-12
Identities = 37/68 (54%), Positives = 49/68 (71%), Gaps = 1/68 (1%)
Frame = -3
Query: 602 LGIPQENIFANQLLFGSSGDFLGFDENEPTSRSGGKASAVQKIKKARGYKTL-TMVGDGA 426
LGIP +N++AN++LF G++ FD N+PTSRSGGKA A+ I+K +L TM+GDGA
Sbjct: 170 LGIPLKNVYANKMLFDYLGEYDSFDINQPTSRSGGKAEAIALIRKENNDDSLITMIGDGA 229
Query: 425 TDFEARGP 402
TD EA P
Sbjct: 230 TDLEAVPP 237
>ref|NP_524001.2| astray CG3705-PA gi|7294945|gb|AAF50274.1| CG3705-PA [Drosophila
melanogaster] gi|15291689|gb|AAK93113.1| LD23646p
[Drosophila melanogaster]
Length = 270
Score = 73.9 bits (180), Expect = 1e-12
Identities = 37/68 (54%), Positives = 49/68 (71%), Gaps = 1/68 (1%)
Frame = -3
Query: 602 LGIPQENIFANQLLFGSSGDFLGFDENEPTSRSGGKASAVQKIKKARGYKTL-TMVGDGA 426
LGIP +N++AN++LF G++ FD N+PTSRSGGKA A+ I+K +L TM+GDGA
Sbjct: 170 LGIPLKNVYANKMLFDYLGEYDSFDINQPTSRSGGKAEAIALIRKENSDDSLITMIGDGA 229
Query: 425 TDFEARGP 402
TD EA P
Sbjct: 230 TDLEAVPP 237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,472,482
Number of Sequences: 1393205
Number of extensions: 10795113
Number of successful extensions: 34343
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 32403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34232
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
