Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002331A_C01 KMC002331A_c01
(406 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB61150.1| putative diphenol oxidase [Oryza sativa (japonic... 74 1e-20
gb|AAO22735.1| putative laccase (diphenol oxidase) family protei... 73 1e-19
ref|NP_199621.1| laccase (diphenol oxidase) family; protein id: ... 73 1e-19
ref|NP_196498.1| laccase (diphenol oxidase) family; protein id: ... 72 1e-18
gb|AAK37830.1|AF132126_1 laccase [Pinus taeda] 69 3e-18
>dbj|BAB61150.1| putative diphenol oxidase [Oryza sativa (japonica cultivar-group)]
Length = 599
Score = 73.9 bits (180), Expect(2) = 1e-20
Identities = 29/43 (67%), Positives = 33/43 (76%)
Frame = -3
Query: 404 LVDPPYQNTVVILKNGWTTIRFRAKNPGVWLMHCHIDRHVTMG 276
L+DPP+QNTV + K+ W IRFRA NPGVW MHCH DRHV G
Sbjct: 530 LIDPPFQNTVSVPKSSWAAIRFRADNPGVWFMHCHFDRHVVWG 572
Score = 45.4 bits (106), Expect(2) = 1e-20
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -1
Query: 280 WGMATTFIVKDGNNPEEKMLPPPLDMPQC 194
WGM T FIVKDG P+ +MLP P +MP+C
Sbjct: 571 WGMDTMFIVKDGKTPQAQMLPRPPNMPEC 599
>gb|AAO22735.1| putative laccase (diphenol oxidase) family protein [Arabidopsis
thaliana] gi|28827682|gb|AAO50685.1| putative laccase
(diphenol oxidase) family protein [Arabidopsis thaliana]
Length = 565
Score = 72.8 bits (177), Expect(2) = 1e-19
Identities = 29/48 (60%), Positives = 34/48 (70%)
Frame = -3
Query: 404 LVDPPYQNTVVILKNGWTTIRFRAKNPGVWLMHCHIDRHVTMGNGYYF 261
L DPPY+NT+ + +NGW IRF A NPGVW MHCH+DRH T G F
Sbjct: 494 LYDPPYKNTMTVPRNGWIAIRFVADNPGVWFMHCHLDRHQTWGMNVVF 541
Score = 43.5 bits (101), Expect(2) = 1e-19
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1
Query: 280 WGMATTFIVKDGNNPEEKMLPPPLDMPQC 194
WGM FIVK+G P +++LPPP D+P C
Sbjct: 535 WGMNVVFIVKNGREPNQQILPPPDDLPPC 563
>ref|NP_199621.1| laccase (diphenol oxidase) family; protein id: At5g48100.1
[Arabidopsis thaliana] gi|10177761|dbj|BAB11074.1|
laccase (diphenol oxidase) [Arabidopsis thaliana]
Length = 490
Score = 72.8 bits (177), Expect(2) = 1e-19
Identities = 29/48 (60%), Positives = 34/48 (70%)
Frame = -3
Query: 404 LVDPPYQNTVVILKNGWTTIRFRAKNPGVWLMHCHIDRHVTMGNGYYF 261
L DPPY+NT+ + +NGW IRF A NPGVW MHCH+DRH T G F
Sbjct: 419 LYDPPYKNTMTVPRNGWIAIRFVADNPGVWFMHCHLDRHQTWGMNVVF 466
Score = 43.5 bits (101), Expect(2) = 1e-19
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -1
Query: 280 WGMATTFIVKDGNNPEEKMLPPPLDMPQC 194
WGM FIVK+G P +++LPPP D+P C
Sbjct: 460 WGMNVVFIVKNGREPNQQILPPPDDLPPC 488
>ref|NP_196498.1| laccase (diphenol oxidase) family; protein id: At5g09360.1
[Arabidopsis thaliana] gi|9955523|emb|CAC05462.1|
laccase-like protein [Arabidopsis thaliana]
Length = 569
Score = 71.6 bits (174), Expect(2) = 1e-18
Identities = 29/48 (60%), Positives = 35/48 (72%)
Frame = -3
Query: 404 LVDPPYQNTVVILKNGWTTIRFRAKNPGVWLMHCHIDRHVTMGNGYYF 261
LVDPP + TV + +NGWT +RF A NPGVWL+HCHI+RH T G F
Sbjct: 500 LVDPPEETTVGVPRNGWTAVRFVANNPGVWLLHCHIERHATWGMNTVF 547
Score = 41.2 bits (95), Expect(2) = 1e-18
Identities = 16/29 (55%), Positives = 19/29 (65%)
Frame = -1
Query: 280 WGMATTFIVKDGNNPEEKMLPPPLDMPQC 194
WGM T FIVKDG +M+ PP D+P C
Sbjct: 541 WGMNTVFIVKDGPTKSSRMVKPPPDLPSC 569
>gb|AAK37830.1|AF132126_1 laccase [Pinus taeda]
Length = 577
Score = 68.6 bits (166), Expect(2) = 3e-18
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = -3
Query: 404 LVDPPYQNTVVILKNGWTTIRFRAKNPGVWLMHCHIDRHVTMG 276
LVDPP +NTV + GWT IRFRA NPGVW MHCH++ H T G
Sbjct: 508 LVDPPERNTVGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWG 550
Score = 43.1 bits (100), Expect(2) = 3e-18
Identities = 14/29 (48%), Positives = 22/29 (75%)
Frame = -1
Query: 280 WGMATTFIVKDGNNPEEKMLPPPLDMPQC 194
WG+ F+V++G+ P++ MLPPP D P+C
Sbjct: 549 WGLKMAFLVENGDGPDQSMLPPPSDFPKC 577
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 339,642,919
Number of Sequences: 1393205
Number of extensions: 6899255
Number of successful extensions: 13713
Number of sequences better than 10.0: 315
Number of HSP's better than 10.0 without gapping: 13371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13713
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
