Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002323A_C01 KMC002323A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T03875 probable homeobox protein OSH45, splice form OSH45 [... 85 1e-17
ref|NP_197904.1| KNAT3 homeodomain protein; protein id: At5g2522... 84 1e-17
gb|AAM63298.1| KNAT3 homeodomain protein [Arabidopsis thaliana] 84 1e-17
gb|AAM53320.1| KNAT3 homeodomain protein [Arabidopsis thaliana] ... 84 1e-17
pir||T03874 probable homeobox protein OSH45, splice form OSH44 [... 84 2e-17
>pir||T03875 probable homeobox protein OSH45, splice form OSH45 [similarity] -
rice gi|1805618|dbj|BAA08553.1| OSH45 [Oryza sativa
(japonica cultivar-group)]
Length = 374
Score = 85.1 bits (209), Expect(2) = 1e-17
Identities = 41/55 (74%), Positives = 46/55 (83%)
Frame = -2
Query: 530 KEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGAGTQTQRKSSGAGETS 366
+EDKARLVQETGLQLKQINNWFINQRKRNWH+NPSSST +T+RKS+ S
Sbjct: 322 EEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSST--SVKTKRKSNAGDNNS 374
Score = 26.6 bits (57), Expect(2) = 1e-17
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 555 HSKWPYPTERRQGK 514
H+KWPYPTE + +
Sbjct: 314 HAKWPYPTEEDKAR 327
>ref|NP_197904.1| KNAT3 homeodomain protein; protein id: At5g25220.1, supported by
cDNA: 21240. [Arabidopsis thaliana]
gi|1346387|sp|P48000|HKL3_ARATH Homeobox protein
knotted-1 like 3 (KNAT3) gi|1045042|emb|CAA63130.1|
KNAT3 homeobox protein [Arabidopsis thaliana]
gi|4063731|gb|AAC98441.1| KNAT3 homeodomain protein
[Arabidopsis thaliana]
Length = 431
Score = 83.6 bits (205), Expect(2) = 1e-17
Identities = 40/57 (70%), Positives = 46/57 (80%)
Frame = -2
Query: 530 KEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGAGTQTQRKSSGAGETSNQ 360
+EDKARLVQETGLQLKQINNWFINQRKRNWH+NPSSST ++ S AG+ S +
Sbjct: 374 EEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSST---VLKNKRKSNAGDNSGR 427
Score = 27.7 bits (60), Expect(2) = 1e-17
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 555 HSKWPYPTERRQGK 514
HSKWPYPTE + +
Sbjct: 366 HSKWPYPTEEDKAR 379
>gb|AAM63298.1| KNAT3 homeodomain protein [Arabidopsis thaliana]
Length = 431
Score = 83.6 bits (205), Expect(2) = 1e-17
Identities = 40/57 (70%), Positives = 46/57 (80%)
Frame = -2
Query: 530 KEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGAGTQTQRKSSGAGETSNQ 360
+EDKARLVQETGLQLKQINNWFINQRKRNWH+NPSSST ++ S AG+ S +
Sbjct: 374 EEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSST---VLKNKRKSNAGDNSGR 427
Score = 27.7 bits (60), Expect(2) = 1e-17
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 555 HSKWPYPTERRQGK 514
HSKWPYPTE + +
Sbjct: 366 HSKWPYPTEEDKAR 379
>gb|AAM53320.1| KNAT3 homeodomain protein [Arabidopsis thaliana]
gi|23197862|gb|AAN15458.1| KNAT3 homeodomain protein
[Arabidopsis thaliana]
Length = 306
Score = 83.6 bits (205), Expect(2) = 1e-17
Identities = 40/57 (70%), Positives = 46/57 (80%)
Frame = -2
Query: 530 KEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGAGTQTQRKSSGAGETSNQ 360
+EDKARLVQETGLQLKQINNWFINQRKRNWH+NPSSST ++ S AG+ S +
Sbjct: 249 EEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSST---VLKNKRKSNAGDNSGR 302
Score = 27.7 bits (60), Expect(2) = 1e-17
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 555 HSKWPYPTERRQGK 514
HSKWPYPTE + +
Sbjct: 241 HSKWPYPTEEDKAR 254
>pir||T03874 probable homeobox protein OSH45, splice form OSH44 [similarity] -
rice gi|1805617|dbj|BAA08552.1| OSH45 [Oryza sativa
(japonica cultivar-group)]
Length = 375
Score = 84.3 bits (207), Expect(2) = 2e-17
Identities = 40/50 (80%), Positives = 45/50 (90%)
Frame = -2
Query: 530 KEDKARLVQETGLQLKQINNWFINQRKRNWHTNPSSSTGAGTQTQRKSSG 381
+EDKARLVQETGLQLKQINNWFINQRKRNWH+NPSSST +T+RK +G
Sbjct: 322 EEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSSST--SVKTKRKRAG 369
Score = 26.6 bits (57), Expect(2) = 2e-17
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = -1
Query: 555 HSKWPYPTERRQGK 514
H+KWPYPTE + +
Sbjct: 314 HAKWPYPTEEDKAR 327
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,621,135
Number of Sequences: 1393205
Number of extensions: 12492158
Number of successful extensions: 29257
Number of sequences better than 10.0: 388
Number of HSP's better than 10.0 without gapping: 28107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29230
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
