Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002315A_C01 KMC002315A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198663.1| DNA repair protein RAD23 homolog; protein id: A... 155 5e-37
gb|AAK59766.1| unknown protein [Arabidopsis thaliana] 155 5e-37
emb|CAB51544.1| RAD23 protein [Lycopersicon esculentum] 153 2e-36
pir||T14336 RAD23 protein, isoform I - carrot gi|1914683|emb|CAA... 152 3e-36
ref|NP_186903.1| putative RAD23; protein id: At3g02540.1, suppor... 138 7e-32
>ref|NP_198663.1| DNA repair protein RAD23 homolog; protein id: At5g38470.1,
supported by cDNA: 36697., supported by cDNA:
gi_14335003, supported by cDNA: gi_16648837, supported
by cDNA: gi_19548080 [Arabidopsis thaliana]
gi|9758825|dbj|BAB09359.1| DNA repair protein RAD23
homolog [Arabidopsis thaliana]
gi|16648838|gb|AAL25609.1| unknown protein [Arabidopsis
thaliana] gi|19548081|gb|AAL87405.1| At5g38470/At5g38470
[Arabidopsis thaliana] gi|21593157|gb|AAM65106.1| DNA
repair protein RAD23 homolog [Arabidopsis thaliana]
Length = 378
Score = 155 bits (391), Expect = 5e-37
Identities = 79/105 (75%), Positives = 89/105 (84%), Gaps = 4/105 (3%)
Frame = -3
Query: 623 PHILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP-EGEEN---PLAAGMTQAITVTPE 456
P ILQPMLQELGKQNP L++LIQEHQ+DFL LINEP EGEEN L A M QA+TVTPE
Sbjct: 273 PQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEENVMEQLEAAMPQAVTVTPE 332
Query: 455 ENEAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHPNEFDD 321
E EAI+RLE MGFDR +VLEVF ACN+NE+LAANYLLDH +EF+D
Sbjct: 333 EREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>gb|AAK59766.1| unknown protein [Arabidopsis thaliana]
Length = 378
Score = 155 bits (391), Expect = 5e-37
Identities = 79/105 (75%), Positives = 89/105 (84%), Gaps = 4/105 (3%)
Frame = -3
Query: 623 PHILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP-EGEEN---PLAAGMTQAITVTPE 456
P ILQPMLQELGKQNP L++LIQEHQ+DFL LINEP EGEEN L A M QA+TVTPE
Sbjct: 273 PQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEENVMEQLEAAMPQAVTVTPE 332
Query: 455 ENEAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHPNEFDD 321
E EAI+RLE MGFDR +VLEVF ACN+NE+LAANYLLDH +EF+D
Sbjct: 333 EREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
>emb|CAB51544.1| RAD23 protein [Lycopersicon esculentum]
Length = 389
Score = 153 bits (387), Expect = 2e-36
Identities = 79/105 (75%), Positives = 88/105 (83%), Gaps = 4/105 (3%)
Frame = -3
Query: 623 PHILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP-EGEENPL---AAGMTQAITVTPE 456
P ILQPMLQELGKQNPHLM+LIQEHQ DFL LINEP EGE N L A + QA+TVTPE
Sbjct: 285 PQILQPMLQELGKQNPHLMRLIQEHQPDFLRLINEPVEGEGNVLGQTAGAIPQAVTVTPE 344
Query: 455 ENEAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHPNEFDD 321
E EAI+RLE MGFDR LVLEV+ ACN+NE+LAANYLLDH +EFD+
Sbjct: 345 EREAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHLHEFDE 389
>pir||T14336 RAD23 protein, isoform I - carrot gi|1914683|emb|CAA72741.1| RAD23,
isoform I [Daucus carota]
Length = 382
Score = 152 bits (385), Expect = 3e-36
Identities = 78/101 (77%), Positives = 88/101 (86%), Gaps = 1/101 (0%)
Frame = -3
Query: 623 PHILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEP-EGEENPLAAGMTQAITVTPEENE 447
P ILQPMLQELGKQNPHLM+LIQEHQ+DFL LINEP EG EN L G QAI+VTPEE +
Sbjct: 283 PQILQPMLQELGKQNPHLMRLIQEHQADFLQLINEPMEGGENLLGHG-PQAISVTPEERD 341
Query: 446 AIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHPNEFD 324
AI+RLE MGFDR+LVLEVF ACN+NE+LAANYLLDH +EF+
Sbjct: 342 AIERLEAMGFDRELVLEVFFACNKNEELAANYLLDHMHEFE 382
>ref|NP_186903.1| putative RAD23; protein id: At3g02540.1, supported by cDNA:
gi_14517453 [Arabidopsis thaliana]
gi|6957717|gb|AAF32461.1| putative RAD23 [Arabidopsis
thaliana] gi|14517454|gb|AAK62617.1| AT3g02540/F16B3_17
[Arabidopsis thaliana] gi|21360453|gb|AAM47342.1|
AT3g02540/F16B3_17 [Arabidopsis thaliana]
Length = 419
Score = 138 bits (347), Expect = 7e-32
Identities = 75/110 (68%), Positives = 87/110 (78%), Gaps = 9/110 (8%)
Frame = -3
Query: 623 PHILQPMLQELGKQNPHLMQLIQEHQSDFLNLINEPE---GEENPL----AAGMTQ--AI 471
P +LQPMLQELGKQNP+LM+LIQ+HQ+DFL LINEP GE L AAGM Q AI
Sbjct: 310 PQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAI 369
Query: 470 TVTPEENEAIQRLEDMGFDRDLVLEVFIACNRNEDLAANYLLDHPNEFDD 321
VT EE EAI+RLE MGF+R LVLEVF ACN+NE+LAANYLLDH +EF++
Sbjct: 370 QVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,792,667
Number of Sequences: 1393205
Number of extensions: 11006495
Number of successful extensions: 29019
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 27829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28934
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
