Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002312A_C01 KMC002312A_c01
(811 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA56940.1| beta-tubulin [Naegleria gruberi] 163 2e-60
emb|CAB86715.1| beta-tubulin [Leishmania major] 158 9e-60
gb|AAK31149.1| beta-tubulin [Leishmania mexicana] 158 2e-59
emb|CAA63779.1| beta-tubulin [Leishmania major] 156 5e-59
gb|AAM02970.1|AF421537_1 beta-tubulin [Crypthecodinium cohnii] 154 8e-59
>emb|CAA56940.1| beta-tubulin [Naegleria gruberi]
Length = 451
Score = 163 bits (412), Expect(2) = 2e-60
Identities = 77/87 (88%), Positives = 85/87 (97%)
Frame = -3
Query: 809 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI 630
RYLTASAMFRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+KSSVCDIPP+GLKMA+TFI
Sbjct: 309 RYLTASAMFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPPRGLKMAATFI 368
Query: 629 GNSTSIQEMFRRVSEQFTAMFRRQGFL 549
GNST+IQEMF+ VSEQFTAMFRR+ FL
Sbjct: 369 GNSTAIQEMFKSVSEQFTAMFRRKAFL 395
Score = 92.0 bits (227), Expect(2) = 2e-60
Identities = 43/51 (84%), Positives = 48/51 (93%), Gaps = 1/51 (1%)
Frame = -1
Query: 559 KAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDE-EYEEEEEE 410
KAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATA++E E++E E E
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEFDENEGE 442
>emb|CAB86715.1| beta-tubulin [Leishmania major]
Length = 443
Score = 158 bits (400), Expect(2) = 9e-60
Identities = 73/87 (83%), Positives = 82/87 (93%)
Frame = -3
Query: 809 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI 630
RYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYF+EWIPNN+KSS+CDIPPKGLKM+ TFI
Sbjct: 309 RYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSICDIPPKGLKMSVTFI 368
Query: 629 GNSTSIQEMFRRVSEQFTAMFRRQGFL 549
GN+T IQEMFRRV EQFT MFRR+ FL
Sbjct: 369 GNNTCIQEMFRRVGEQFTGMFRRKAFL 395
Score = 94.7 bits (234), Expect(2) = 9e-60
Identities = 44/50 (88%), Positives = 48/50 (96%), Gaps = 1/50 (2%)
Frame = -1
Query: 559 KAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDE-EYEEEEE 413
KAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT ++E EY+EEEE
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEYDEEEE 441
>gb|AAK31149.1| beta-tubulin [Leishmania mexicana]
Length = 443
Score = 158 bits (400), Expect(2) = 2e-59
Identities = 73/87 (83%), Positives = 82/87 (93%)
Frame = -3
Query: 809 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI 630
RYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYF+EWIPNN+KSS+CDIPPKGLKM+ TFI
Sbjct: 309 RYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSICDIPPKGLKMSVTFI 368
Query: 629 GNSTSIQEMFRRVSEQFTAMFRRQGFL 549
GN+T IQEMFRRV EQFT MFRR+ FL
Sbjct: 369 GNNTCIQEMFRRVGEQFTGMFRRKAFL 395
Score = 93.6 bits (231), Expect(2) = 2e-59
Identities = 43/50 (86%), Positives = 48/50 (96%), Gaps = 1/50 (2%)
Frame = -1
Query: 559 KAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDE-EYEEEEE 413
KAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT ++E EY+EE+E
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEYDEEQE 441
>emb|CAA63779.1| beta-tubulin [Leishmania major]
Length = 443
Score = 156 bits (394), Expect(2) = 5e-59
Identities = 72/87 (82%), Positives = 81/87 (92%)
Frame = -3
Query: 809 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI 630
RYLTASA+FRG+MSTKEVDEQM+NVQNKNSSYF+EWIPNN+KSS+CDIPPKGLKM+ TFI
Sbjct: 309 RYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFIEWIPNNIKSSICDIPPKGLKMSVTFI 368
Query: 629 GNSTSIQEMFRRVSEQFTAMFRRQGFL 549
GN+T IQEMFRRV EQ T MFRR+ FL
Sbjct: 369 GNNTCIQEMFRRVGEQLTGMFRRKAFL 395
Score = 94.7 bits (234), Expect(2) = 5e-59
Identities = 44/50 (88%), Positives = 48/50 (96%), Gaps = 1/50 (2%)
Frame = -1
Query: 559 KAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDE-EYEEEEE 413
KAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDAT ++E EY+EEEE
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEYDEEEE 441
>gb|AAM02970.1|AF421537_1 beta-tubulin [Crypthecodinium cohnii]
Length = 445
Score = 154 bits (390), Expect(2) = 8e-59
Identities = 72/87 (82%), Positives = 82/87 (93%)
Frame = -3
Query: 809 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFI 630
RYLTA+A+FRG+MSTKEVDEQM+NVQNKNSSYFVEWIPNN+K+SVCDIPPKGLKMA F
Sbjct: 309 RYLTAAALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKASVCDIPPKGLKMAVAFA 368
Query: 629 GNSTSIQEMFRRVSEQFTAMFRRQGFL 549
GNST+IQEMF+RV+E FTAMFRR+ FL
Sbjct: 369 GNSTAIQEMFKRVAEYFTAMFRRKAFL 395
Score = 95.5 bits (236), Expect(2) = 8e-59
Identities = 45/51 (88%), Positives = 49/51 (95%), Gaps = 1/51 (1%)
Frame = -1
Query: 559 KAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADDE-EYEEEEEE 410
KAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQYQDATAD+E E++EEE E
Sbjct: 392 KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEFDEEEGE 442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 692,917,246
Number of Sequences: 1393205
Number of extensions: 15930182
Number of successful extensions: 89619
Number of sequences better than 10.0: 1229
Number of HSP's better than 10.0 without gapping: 54699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73204
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41456493416
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
