Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002306A_C01 KMC002306A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF24553.1|AC007508_16 F1K23.24 [Arabidopsis thaliana] 43 0.003
ref|NP_174174.1| unknown protein; protein id: At1g28520.1 [Arabi... 43 0.003
ref|NP_571891.1| atonal homolog 2a [Danio rerio] gi|4566748|gb|A... 33 4.0
ref|NP_635821.1| dihydrolipoamide acyltransferase [Xanthomonas c... 32 8.8
ref|NP_640798.1| dihydrolipoamide acyltransferase [Xanthomonas a... 32 8.8
>gb|AAF24553.1|AC007508_16 F1K23.24 [Arabidopsis thaliana]
Length = 190
Score = 43.1 bits (100), Expect = 0.003
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = -2
Query: 622 DNKRPAKGRAKINARVAMGGVYSHRVTPLNGTYEYGLASPYDYLVDNLGDYY 467
+NKR KGR K++ +VA G V + + +YG+ ++YLV NL DYY
Sbjct: 141 NNKRCIKGRPKVSTKVATGNVQN----TVEQANDYGVGEEFNYLVGNLSDYY 188
>ref|NP_174174.1| unknown protein; protein id: At1g28520.1 [Arabidopsis thaliana]
gi|25370819|pir||B86411 protein F3M18.4 [imported] -
Arabidopsis thaliana
gi|6560771|gb|AAF16771.1|AC010155_24 F3M18.4
[Arabidopsis thaliana]
Length = 486
Score = 43.1 bits (100), Expect = 0.003
Identities = 21/52 (40%), Positives = 31/52 (59%)
Frame = -2
Query: 622 DNKRPAKGRAKINARVAMGGVYSHRVTPLNGTYEYGLASPYDYLVDNLGDYY 467
+NKR KGR K++ +VA G V + + +YG+ ++YLV NL DYY
Sbjct: 437 NNKRCIKGRPKVSTKVATGNVQN----TVEQANDYGVGEEFNYLVGNLSDYY 484
>ref|NP_571891.1| atonal homolog 2a [Danio rerio] gi|4566748|gb|AAD23441.1|AF115772_1
basic helix-loop-helix transcription factor Ndr1a [Danio
rerio]
Length = 325
Score = 32.7 bits (73), Expect = 4.0
Identities = 20/61 (32%), Positives = 29/61 (46%)
Frame = -3
Query: 477 VTTMGHDLPLSYGTGCCIQPPYKFSAGFFLLGPSTFSDLFCPPS*VTRIQGYFLPWQDIV 298
+ ++ H+ P+ YG C Y SA F P+ SDL P ++G F P QD +
Sbjct: 263 IFSLKHEEPVEYGKSCHYGTRYWRSAAFHRPEPAGSSDLHFPYD--IHLRGQFYPVQDEL 320
Query: 297 N 295
N
Sbjct: 321 N 321
>ref|NP_635821.1| dihydrolipoamide acyltransferase [Xanthomonas campestris pv.
campestris str. ATCC 33913] gi|21111411|gb|AAM39745.1|
dihydrolipoamide acyltransferase [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 502
Score = 31.6 bits (70), Expect = 8.8
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 607 AKGRAKINARVAMGGVYSHRVTPLNGTYEYGLAS 506
A GRA+ MGGV +H+V PL+ T+++ A+
Sbjct: 450 AAGRARYQLTPVMGGVETHKVMPLSLTFDHRAAT 483
>ref|NP_640798.1| dihydrolipoamide acyltransferase [Xanthomonas axonopodis pv. citri
str. 306] gi|21106528|gb|AAM35334.1| dihydrolipoamide
acyltransferase [Xanthomonas axonopodis pv. citri str.
306]
Length = 505
Score = 31.6 bits (70), Expect = 8.8
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = -2
Query: 607 AKGRAKINARVAMGGVYSHRVTPLNGTYEYGLAS 506
A GRA+ MGGV +H+V PL+ T+++ A+
Sbjct: 453 AAGRARYQLTPVMGGVETHKVMPLSLTFDHRAAT 486
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,434,937
Number of Sequences: 1393205
Number of extensions: 10905960
Number of successful extensions: 25371
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25364
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
