Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002296A_C01 KMC002296A_c01
(757 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_041860.1| early protein [Human papillomavirus type 9] gi|... 33 3.4
ref|NP_041861.1| early protein [Human papillomavirus type 9] gi|... 33 3.4
ref|NP_469379.1| similar to endoglucanase [Listeria innocua] gi|... 33 5.8
dbj|BAA84607.1| unnamed protein product [Oryza sativa (japonica ... 32 7.5
dbj|BAA35121.1| DnaJ homolog [Salix gilgiana] 32 9.8
>ref|NP_041860.1| early protein [Human papillomavirus type 9]
gi|549257|sp|P36801|VE6_HPV09 E6 PROTEIN
gi|480258|pir||S36590 E6 protein - human papillomavirus
type 9 gi|397069|emb|CAA52482.1| early protein [Human
papillomavirus type 9]
Length = 148
Score = 33.5 bits (75), Expect = 3.4
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 387 RFLNLLLSHFSLLHCGHRCMSLIVSPDHLTFN*TSNPQYSS 509
+F N LS+F LL+ H+C+ LI + + L + S+ Y+S
Sbjct: 35 KFCNRFLSYFELLNFDHKCLQLIWTEEDLVYGLCSSCAYAS 75
>ref|NP_041861.1| early protein [Human papillomavirus type 9]
gi|397070|emb|CAA52483.1| early protein [Human
papillomavirus type 9]
Length = 141
Score = 33.5 bits (75), Expect = 3.4
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +3
Query: 387 RFLNLLLSHFSLLHCGHRCMSLIVSPDHLTFN*TSNPQYSS 509
+F N LS+F LL+ H+C+ LI + + L + S+ Y+S
Sbjct: 28 KFCNRFLSYFELLNFDHKCLQLIWTEEDLVYGLCSSCAYAS 68
>ref|NP_469379.1| similar to endoglucanase [Listeria innocua] gi|25381129|pir||AI1436
endoglucanase homolog lin0032 [imported] - Listeria
innocua (strain Clip11262) gi|16412453|emb|CAC95265.1|
similar to endoglucanase [Listeria innocua]
Length = 800
Score = 32.7 bits (73), Expect = 5.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 60 ININGFTVHVREINKVFY*GKGYAPST 140
+ N FT+H +E NKV + GKGY +T
Sbjct: 244 LEANSFTIHEKETNKVVFTGKGYQNTT 270
>dbj|BAA84607.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 106
Score = 32.3 bits (72), Expect = 7.5
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = -2
Query: 681 MDTTNLVGFVNAQVLPILYERMRELWFR*IFTEGEVTAAKSTGDSQITMKKQLQVPLMNY 502
MDT+ FVN ++L + R + EG + +ST Q+T+K P+ +Y
Sbjct: 1 MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60
Query: 501 IE 496
+E
Sbjct: 61 VE 62
>dbj|BAA35121.1| DnaJ homolog [Salix gilgiana]
Length = 420
Score = 32.0 bits (71), Expect = 9.8
Identities = 14/20 (70%), Positives = 15/20 (75%)
Frame = -1
Query: 472 K*SGETINDIHLCPQCKREK 413
K +GETIND CPQCK EK
Sbjct: 197 KGTGETINDKDRCPQCKGEK 216
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,816,949
Number of Sequences: 1393205
Number of extensions: 13866615
Number of successful extensions: 27404
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 26695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27398
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36877108757
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
