Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002294A_C01 KMC002294A_c01
(409 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO42209.1| unknown protein [Arabidopsis thaliana] 69 1e-11
ref|NP_194380.1| putative protein; protein id: At4g26500.1, supp... 69 1e-11
gb|AAO23079.1| unknown [Glycine max] 66 1e-10
ref|NP_564702.1| Expressed protein; protein id: At1g55805.1, sup... 62 1e-09
gb|ZP_00048046.1| hypothetical protein [Magnetospirillum magneto... 49 2e-05
>gb|AAO42209.1| unknown protein [Arabidopsis thaliana]
Length = 371
Score = 68.9 bits (167), Expect = 1e-11
Identities = 33/38 (86%), Positives = 37/38 (96%)
Frame = -3
Query: 407 FEGKSLVKRHRLIYSLLQEELQSGLHALSIVAKTPSEV 294
F+GKSLVKRHRLIY LLQ+EL+SGLHALSIVAKTP+EV
Sbjct: 334 FQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAEV 371
>ref|NP_194380.1| putative protein; protein id: At4g26500.1, supported by cDNA:
112720. [Arabidopsis thaliana] gi|7486788|pir||T05054
hypothetical protein M3E9.70 - Arabidopsis thaliana
gi|2982456|emb|CAA18220.1| putative protein [Arabidopsis
thaliana] gi|7269502|emb|CAB79505.1| putative protein
[Arabidopsis thaliana] gi|21536824|gb|AAM61156.1|
unknown [Arabidopsis thaliana]
Length = 371
Score = 68.9 bits (167), Expect = 1e-11
Identities = 33/38 (86%), Positives = 37/38 (96%)
Frame = -3
Query: 407 FEGKSLVKRHRLIYSLLQEELQSGLHALSIVAKTPSEV 294
F+GKSLVKRHRLIY LLQ+EL+SGLHALSIVAKTP+EV
Sbjct: 334 FQGKSLVKRHRLIYDLLQDELKSGLHALSIVAKTPAEV 371
>gb|AAO23079.1| unknown [Glycine max]
Length = 104
Score = 65.9 bits (159), Expect = 1e-10
Identities = 32/39 (82%), Positives = 35/39 (89%)
Frame = -3
Query: 407 FEGKSLVKRHRLIYSLLQEELQSGLHALSIVAKTPSEVS 291
FEG+SLVKRHRLIY LL +ELQSGLHALSIVAKTP E +
Sbjct: 63 FEGQSLVKRHRLIYDLLADELQSGLHALSIVAKTPHETN 101
>ref|NP_564702.1| Expressed protein; protein id: At1g55805.1, supported by cDNA:
gi_14488091 [Arabidopsis thaliana]
gi|14488092|gb|AAK63866.1|AF389294_1 AT1g55800/F14J16_13
[Arabidopsis thaliana] gi|23505763|gb|AAN28741.1|
At1g55800/F14J16_13 [Arabidopsis thaliana]
Length = 109
Score = 62.4 bits (150), Expect = 1e-09
Identities = 29/37 (78%), Positives = 34/37 (91%)
Frame = -3
Query: 407 FEGKSLVKRHRLIYSLLQEELQSGLHALSIVAKTPSE 297
FEG +LVKRHRL+Y LL+EEL +GLHALSIV+KTPSE
Sbjct: 68 FEGMNLVKRHRLVYHLLREELDTGLHALSIVSKTPSE 104
>gb|ZP_00048046.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 69
Score = 48.5 bits (114), Expect = 2e-05
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = -3
Query: 407 FEGKSLVKRHRLIYSLLQEELQSGLHALSIVAKTPSE 297
FEGKS V+RHRL+ LL E + GLHAL++ A+TP E
Sbjct: 31 FEGKSRVERHRLVNGLLDEAFKRGLHALAVRARTPGE 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 335,779,706
Number of Sequences: 1393205
Number of extensions: 6812335
Number of successful extensions: 13592
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 13291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13584
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
