Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002293A_C01 KMC002293A_c01
(687 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61022.1| dihydroxypolyprenylbenzoate methyltransferase [Ar... 37 0.33
ref|NP_180649.1| dihydroxypolyprenylbenzoate methyltransferase; ... 37 0.33
pir||T52284 3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase... 35 0.97
gb|EAA18433.1| hypothetical protein [Plasmodium yoelii yoelii] 33 2.8
>gb|AAM61022.1| dihydroxypolyprenylbenzoate methyltransferase [Arabidopsis
thaliana]
Length = 322
Score = 36.6 bits (83), Expect = 0.33
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -3
Query: 685 WSLSDDISVNFIAFGTKTKSI 623
W LSDDISVN+IA+GTK K +
Sbjct: 299 WLLSDDISVNYIAYGTKRKDL 319
>ref|NP_180649.1| dihydroxypolyprenylbenzoate methyltransferase; protein id:
At2g30920.1, supported by cDNA: 108529., supported by
cDNA: gi_15027942, supported by cDNA: gi_20259178
[Arabidopsis thaliana] gi|21264383|sp|O49354|COQ3_ARATH
Hexaprenyldihydroxybenzoate methyltransferase,
mitochondrial precursor (Dihydroxyhexaprenylbenzoate
methyltransferase) (3,4-dihydroxy-5-hexaprenylbenzoate
methyltransferase) (DHHB methyltransferase) (DHHB-MT)
(DHHB-MTase) gi|25408111|pir||C84714
dihydroxypolyprenylbenzoate methyltransferase [imported]
- Arabidopsis thaliana gi|3201619|gb|AAC20726.1|
dihydroxypolyprenylbenzoate methyltransferase
[Arabidopsis thaliana] gi|15027943|gb|AAK76502.1|
putative dihydroxypolyprenylbenzoate methyltransferase
[Arabidopsis thaliana] gi|20259179|gb|AAM14305.1|
putative dihydroxypolyprenylbenzoate methyltransferase
[Arabidopsis thaliana]
Length = 322
Score = 36.6 bits (83), Expect = 0.33
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -3
Query: 685 WSLSDDISVNFIAFGTKTKSI 623
W LSDDISVN+IA+GTK K +
Sbjct: 299 WLLSDDISVNYIAYGTKRKDL 319
>pir||T52284 3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase (EC 2.1.1.-)
precursor [validated] - Arabidopsis thaliana
gi|2832402|emb|CAA75340.1| dihydroxypolyprenylbenzoate
methyltransferase [Arabidopsis thaliana]
Length = 322
Score = 35.0 bits (79), Expect = 0.97
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = -3
Query: 685 WSLSDDISVNFIAFGTKTKSI 623
W LSDDISVN+I +GTK K +
Sbjct: 299 WLLSDDISVNYITYGTKRKDL 319
>gb|EAA18433.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 460
Score = 33.5 bits (75), Expect = 2.8
Identities = 19/66 (28%), Positives = 32/66 (47%), Gaps = 2/66 (3%)
Frame = -2
Query: 296 YESVFAYLQPIIIL*LSAYVISIYY*RFTPRHSYSCIFLFILLEQLY--LSIHLLQPALH 123
+ +F Y+ +L + Y++SIYY + R Y F F +Y + IHLL
Sbjct: 290 FYKIFCYIFAHYVLVMGLYILSIYYNIYVYRDIYEHSFNFFCYHYVYNNIHIHLLMLFYA 349
Query: 122 LESLTF 105
L+++ F
Sbjct: 350 LQNIVF 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,766,986
Number of Sequences: 1393205
Number of extensions: 10868387
Number of successful extensions: 31019
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31004
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
