Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002282A_C02 KMC002282A_c02
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF82791.1|AF275316_1 multifunctional transport intrinsic mem... 125 8e-32
emb|CAB45652.1| nodulin26-like major intrinsic protein [Pisum sa... 116 2e-25
gb|AAL32128.1| multifunctional aquaporin [Medicago truncatula] 110 1e-23
sp|P08995|NO26_SOYBN NODULIN-26 (N-26) gi|18710|emb|CAA28471.1| ... 110 1e-23
pir||S01444 nodulin-26 precursor - soybean 108 3e-23
>gb|AAF82791.1|AF275316_1 multifunctional transport intrinsic membrane protein 2; LIMP2
[Lotus japonicus]
Length = 270
Score = 125 bits (314), Expect(2) = 8e-32
Identities = 60/60 (100%), Positives = 60/60 (100%)
Frame = -1
Query: 551 TVLLNVLFAGPITGASMNPARSIGSAFVHNEYRGIWIYLLSPTLGAVAGAWVYNIVRYTD 372
TVLLNVLFAGPITGASMNPARSIGSAFVHNEYRGIWIYLLSPTLGAVAGAWVYNIVRYTD
Sbjct: 195 TVLLNVLFAGPITGASMNPARSIGSAFVHNEYRGIWIYLLSPTLGAVAGAWVYNIVRYTD 254
Score = 33.1 bits (74), Expect(2) = 8e-32
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -3
Query: 366 PLREITKNVSFLKGI 322
PLREITKNVSFLKGI
Sbjct: 256 PLREITKNVSFLKGI 270
>emb|CAB45652.1| nodulin26-like major intrinsic protein [Pisum sativum]
Length = 270
Score = 116 bits (290), Expect = 2e-25
Identities = 55/75 (73%), Positives = 63/75 (83%)
Frame = -1
Query: 551 TVLLNVLFAGPITGASMNPARSIGSAFVHNEYRGIWIYLLSPTLGAVAGAWVYNIVRYTD 372
TVLLNV+FAGPITGASMNPARSIG AFVHNEYRGIWIY++SP +GAV+GAWVYN++RYTD
Sbjct: 193 TVLLNVMFAGPITGASMNPARSIGPAFVHNEYRGIWIYMISPIVGAVSGAWVYNVIRYTD 252
Query: 371 PRPCVRSLKMSLFSK 327
+P K F K
Sbjct: 253 -KPVREITKSGSFLK 266
>gb|AAL32128.1| multifunctional aquaporin [Medicago truncatula]
Length = 276
Score = 110 bits (274), Expect = 1e-23
Identities = 52/76 (68%), Positives = 62/76 (81%)
Frame = -1
Query: 551 TVLLNVLFAGPITGASMNPARSIGSAFVHNEYRGIWIYLLSPTLGAVAGAWVYNIVRYTD 372
T+LLNV+ AGP+TGASMNP R++G AFVHNEYRGIWIYLLSP LGA+AGAWVYN VRYT+
Sbjct: 193 TLLLNVMIAGPVTGASMNPVRTLGPAFVHNEYRGIWIYLLSPILGAIAGAWVYNTVRYTN 252
Query: 371 PRPCVRSLKMSLFSKE 324
+P + + F KE
Sbjct: 253 -KPLREITQSASFLKE 267
>sp|P08995|NO26_SOYBN NODULIN-26 (N-26) gi|18710|emb|CAA28471.1| nodulin [Glycine max]
Length = 271
Score = 110 bits (274), Expect = 1e-23
Identities = 51/75 (68%), Positives = 61/75 (81%)
Frame = -1
Query: 551 TVLLNVLFAGPITGASMNPARSIGSAFVHNEYRGIWIYLLSPTLGAVAGAWVYNIVRYTD 372
T+LLNV+ GP+TGASMNPARS+G AFVH EY GIWIYLL+P +GA+AGAWVYNIVRYTD
Sbjct: 192 TLLLNVIIGGPVTGASMNPARSLGPAFVHGEYEGIWIYLLAPVVGAIAGAWVYNIVRYTD 251
Query: 371 PRPCVRSLKMSLFSK 327
+P + K + F K
Sbjct: 252 -KPLSETTKSASFLK 265
>pir||S01444 nodulin-26 precursor - soybean
Length = 271
Score = 108 bits (271), Expect = 3e-23
Identities = 51/75 (68%), Positives = 60/75 (80%)
Frame = -1
Query: 551 TVLLNVLFAGPITGASMNPARSIGSAFVHNEYRGIWIYLLSPTLGAVAGAWVYNIVRYTD 372
T+LLNV+ GP+TGASMNPARS+G AFVH EY GIWIYLL+P +GA+AGAWVYNIVRYTD
Sbjct: 192 TLLLNVIIGGPVTGASMNPARSLGPAFVHGEYEGIWIYLLAPVVGAIAGAWVYNIVRYTD 251
Query: 371 PRPCVRSLKMSLFSK 327
+P K + F K
Sbjct: 252 -KPLSEITKSASFLK 265
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,454,277
Number of Sequences: 1393205
Number of extensions: 10233905
Number of successful extensions: 24677
Number of sequences better than 10.0: 527
Number of HSP's better than 10.0 without gapping: 23666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24504
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
