Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002276A_C01 KMC002276A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171821.1| unknown protein; protein id: At1g03220.1, suppo... 91 1e-17
gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana] 91 1e-17
ref|NP_563679.1| expressed protein; protein id: At1g03230.1, sup... 87 1e-16
gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibito... 86 2e-16
ref|NP_197411.1| dermal glycoprotein precursor -like protein; pr... 85 7e-16
>ref|NP_171821.1| unknown protein; protein id: At1g03220.1, supported by cDNA:
12454., supported by cDNA: gi_13272442, supported by
cDNA: gi_14334705, supported by cDNA: gi_16323419
[Arabidopsis thaliana] gi|25296172|pir||F86163
hypothetical protein F15K9.17 - Arabidopsis thaliana
gi|3850579|gb|AAC72119.1| Strong similarity to gb|D14550
extracellular dermal glycoprotein (EDGP) precursor from
Daucus carota. ESTs gb|H37281, gb|T44167, gb|T21813,
gb|N38437, gb|Z26470, gb|R65072, gb|N76373, gb|F15470,
gb|Z35182, gb|H76373, gb|Z34678 and gb|Z35387 come from
this gene. [Arabidopsis thaliana]
gi|13272443|gb|AAK17160.1|AF325092_1 unknown protein
[Arabidopsis thaliana] gi|14334706|gb|AAK59531.1|
unknown protein [Arabidopsis thaliana]
gi|16323420|gb|AAL15204.1| unknown protein [Arabidopsis
thaliana]
Length = 433
Score = 90.5 bits (223), Expect = 1e-17
Identities = 41/67 (61%), Positives = 54/67 (80%)
Frame = -2
Query: 552 NSMVKVNSDVMCLGFLDGGVNQRNPIVIGGYQLEDVLVQFDFETSMVGFSSSLLMRQSSC 373
NSMV V+ DV+CLGF+DGGVN R +VIGG+QLED L++FD ++ GFSS+LL RQ++C
Sbjct: 365 NSMVSVSDDVICLGFVDGGVNARTSVVIGGFQLEDNLIEFDLASNKFGFSSTLLGRQTNC 424
Query: 372 SNFRFGS 352
+NF F S
Sbjct: 425 ANFNFTS 431
>gb|AAM61574.1| EDGP precursor [Arabidopsis thaliana]
Length = 433
Score = 90.5 bits (223), Expect = 1e-17
Identities = 41/67 (61%), Positives = 54/67 (80%)
Frame = -2
Query: 552 NSMVKVNSDVMCLGFLDGGVNQRNPIVIGGYQLEDVLVQFDFETSMVGFSSSLLMRQSSC 373
NSMV V+ DV+CLGF+DGGVN R +VIGG+QLED L++FD ++ GFSS+LL RQ++C
Sbjct: 365 NSMVSVSDDVICLGFVDGGVNARTSVVIGGFQLEDNLIEFDLASNRFGFSSTLLGRQTNC 424
Query: 372 SNFRFGS 352
+NF F S
Sbjct: 425 ANFNFTS 431
>ref|NP_563679.1| expressed protein; protein id: At1g03230.1, supported by cDNA:
gi_12083229 [Arabidopsis thaliana]
gi|25296173|pir||G86163 hypothetical protein F15K9.16 -
Arabidopsis thaliana gi|3850580|gb|AAC72120.1| Strong
similarity to gb|D14550 extracellular dermal
glycoprotein (EDGP) precursor from Daucus carota. ESTs
gb|84105 and gb|AI100071 come from this gene.
[Arabidopsis thaliana]
gi|12083230|gb|AAG48774.1|AF332411_1 unknown protein
[Arabidopsis thaliana]
Length = 434
Score = 87.0 bits (214), Expect = 1e-16
Identities = 40/67 (59%), Positives = 53/67 (78%)
Frame = -2
Query: 552 NSMVKVNSDVMCLGFLDGGVNQRNPIVIGGYQLEDVLVQFDFETSMVGFSSSLLMRQSSC 373
NSMV V+ DV+CLGF+DGGVN +VIGG+QLED L++FD ++ GFSS+LL RQ++C
Sbjct: 366 NSMVSVSDDVICLGFVDGGVNPGASVVIGGFQLEDNLIEFDLASNKFGFSSTLLGRQTNC 425
Query: 372 SNFRFGS 352
+NF F S
Sbjct: 426 ANFNFTS 432
>gb|AAN87262.1| xyloglucan-specific fungal endoglucanase inhibitor protein
precursor [Lycopersicon esculentum]
Length = 438
Score = 86.3 bits (212), Expect = 2e-16
Identities = 40/67 (59%), Positives = 52/67 (76%)
Frame = -2
Query: 552 NSMVKVNSDVMCLGFLDGGVNQRNPIVIGGYQLEDVLVQFDFETSMVGFSSSLLMRQSSC 373
NSMV+V+ +V+CLG LDGGVN R IVIGG+ +ED L+QFD S +GF+SS+L RQ++C
Sbjct: 370 NSMVQVSENVLCLGVLDGGVNARTSIVIGGHTIEDNLLQFDHAASRLGFTSSILFRQTTC 429
Query: 372 SNFRFGS 352
NF F S
Sbjct: 430 DNFNFTS 436
>ref|NP_197411.1| dermal glycoprotein precursor -like protein; protein id:
At5g19100.1 [Arabidopsis thaliana]
Length = 391
Score = 84.7 bits (208), Expect = 7e-16
Identities = 39/61 (63%), Positives = 49/61 (79%)
Frame = -2
Query: 552 NSMVKVNSDVMCLGFLDGGVNQRNPIVIGGYQLEDVLVQFDFETSMVGFSSSLLMRQSSC 373
NS+VKVN +V+CLGF+DGGV + PIVIGG+Q+ED LV+FD E S FSSSLL+ +SC
Sbjct: 324 NSLVKVNKNVVCLGFVDGGVKPKYPIVIGGFQMEDNLVEFDLEASKFSFSSSLLLHNTSC 383
Query: 372 S 370
S
Sbjct: 384 S 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,626,974
Number of Sequences: 1393205
Number of extensions: 10154320
Number of successful extensions: 25889
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 24137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25811
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
