Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002275A_C01 KMC002275A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190457.1| F-box protein family; protein id: At3g48880.2, ... 97 9e-20
gb|AAM67213.1| unknown [Arabidopsis thaliana] 97 9e-20
gb|AAG13618.1|AC078840_9 putative Rhizobium-induced nodule devel... 74 6e-13
>ref|NP_190457.1| F-box protein family; protein id: At3g48880.2, supported by cDNA:
99337., supported by cDNA: gi_15028346, supported by
cDNA: gi_19310704 [Arabidopsis thaliana]
gi|11358182|pir||T49284 hypothetical protein T21J18.150
- Arabidopsis thaliana gi|7576226|emb|CAB87916.1|
putative protein [Arabidopsis thaliana]
gi|15028347|gb|AAK76650.1| unknown protein [Arabidopsis
thaliana] gi|19310705|gb|AAL85083.1| unknown protein
[Arabidopsis thaliana]
Length = 309
Score = 97.1 bits (240), Expect = 9e-20
Identities = 44/66 (66%), Positives = 53/66 (79%), Gaps = 1/66 (1%)
Frame = -3
Query: 472 PQHKGIIREIDQTIRQKASRLRSFITCMDD-SCVMCQRTRTDEGLVRWYKYEEGLWKTDE 296
PQ K I+RE+D+TI +K +RL+ F+TCMD +CVMCQRT DEG+VRWYKYEEG WK DE
Sbjct: 244 PQQKVIVRELDKTIMEKTARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWKVDE 303
Query: 295 VRSLAL 278
V SL L
Sbjct: 304 VSSLHL 309
>gb|AAM67213.1| unknown [Arabidopsis thaliana]
Length = 309
Score = 97.1 bits (240), Expect = 9e-20
Identities = 44/66 (66%), Positives = 53/66 (79%), Gaps = 1/66 (1%)
Frame = -3
Query: 472 PQHKGIIREIDQTIRQKASRLRSFITCMDD-SCVMCQRTRTDEGLVRWYKYEEGLWKTDE 296
PQ K I+RE+D+TI +K +RL+ F+TCMD +CVMCQRT DEG+VRWYKYEEG WK DE
Sbjct: 244 PQQKVIVRELDKTIMEKTARLKKFLTCMDHKTCVMCQRTENDEGIVRWYKYEEGDWKVDE 303
Query: 295 VRSLAL 278
V SL L
Sbjct: 304 VSSLHL 309
>gb|AAG13618.1|AC078840_9 putative Rhizobium-induced nodule development associated protein
[Oryza sativa (japonica cultivar-group)]
Length = 214
Score = 74.3 bits (181), Expect = 6e-13
Identities = 33/62 (53%), Positives = 41/62 (65%)
Frame = -3
Query: 457 IIREIDQTIRQKASRLRSFITCMDDSCVMCQRTRTDEGLVRWYKYEEGLWKTDEVRSLAL 278
+I E+D QKASRLR F C SC+ CQR DEG++RWY+YE+ W+ DEV SL L
Sbjct: 137 VIHELDDQTLQKASRLREFHHCQSRSCLACQRMMADEGIMRWYRYEDWFWRRDEVSSLDL 196
Query: 277 *D 272
D
Sbjct: 197 QD 198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 387,483,305
Number of Sequences: 1393205
Number of extensions: 7472365
Number of successful extensions: 15441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 15179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15438
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
