Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002268A_C07 KMC002268A_c07
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL31478.1|AF319473_1 alpha-expansin 7 precursor [Cucumis sat... 62 7e-09
emb|CAC06433.1| expansin [Festuca pratensis] 60 3e-08
ref|NP_173999.1| expansin, putative; protein id: At1g26770.1, su... 57 1e-07
gb|AAM62474.1| alpha-expansin 10 precursor (At-EXP10) (AtEx10) (... 57 1e-07
gb|AAK56123.1|AF332173_1 alpha-expansin 5 [Zea mays] 57 2e-07
>gb|AAL31478.1|AF319473_1 alpha-expansin 7 precursor [Cucumis sativus]
Length = 179
Score = 61.6 bits (148), Expect = 7e-09
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = -1
Query: 594 SFKVTTSDGRTIISNHAVPAGWPFGQTFSGGQ 499
SFKVTTSDGRT+ISN+AVPAGW FGQT+SG Q
Sbjct: 147 SFKVTTSDGRTVISNNAVPAGWSFGQTYSGAQ 178
>emb|CAC06433.1| expansin [Festuca pratensis]
Length = 252
Score = 59.7 bits (143), Expect = 3e-08
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -1
Query: 594 SFKVTTSDGRTIISNHAVPAGWPFGQTFSGGQ 499
SFKVT SDGRTI+SN+A PAGW FGQTF GGQ
Sbjct: 220 SFKVTISDGRTIVSNNAAPAGWQFGQTFEGGQ 251
>ref|NP_173999.1| expansin, putative; protein id: At1g26770.1, supported by cDNA:
14132., supported by cDNA: gi_15529245, supported by
cDNA: gi_16974398, supported by cDNA: gi_7385136
[Arabidopsis thaliana] gi|20138023|sp|Q9LDR9|EX10_ARATH
Alpha-expansin 10 precursor (At-EXP10) (AtEx10)
(Ath-ExpAlpha-1.1) gi|7385137|gb|AAF61712.1|AF229437_1
expansin 10 [Arabidopsis thaliana]
gi|7385139|gb|AAF61713.1|AF229431_1 expansin 10
[Arabidopsis thaliana]
gi|9295725|gb|AAF87031.1|AC006535_9 T24P13.15
[Arabidopsis thaliana] gi|15529246|gb|AAK97717.1|
At1g26770/T24P13_14 [Arabidopsis thaliana]
gi|16974399|gb|AAL31125.1| At1g26770/T24P13_14
[Arabidopsis thaliana]
Length = 249
Score = 57.4 bits (137), Expect = 1e-07
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -1
Query: 594 SFKVTTSDGRTIISNHAVPAGWPFGQTFSGGQ 499
SFKVTTSDGRT++S +A PAGW +GQTF+GGQ
Sbjct: 216 SFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQ 247
>gb|AAM62474.1| alpha-expansin 10 precursor (At-EXP10) (AtEx10) (Ath-ExpAlpha-1.1)
[Arabidopsis thaliana]
Length = 249
Score = 57.4 bits (137), Expect = 1e-07
Identities = 24/32 (75%), Positives = 29/32 (90%)
Frame = -1
Query: 594 SFKVTTSDGRTIISNHAVPAGWPFGQTFSGGQ 499
SFKVTTSDGRT++S +A PAGW +GQTF+GGQ
Sbjct: 216 SFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQ 247
>gb|AAK56123.1|AF332173_1 alpha-expansin 5 [Zea mays]
Length = 226
Score = 57.0 bits (136), Expect = 2e-07
Identities = 25/32 (78%), Positives = 27/32 (84%)
Frame = -1
Query: 594 SFKVTTSDGRTIISNHAVPAGWPFGQTFSGGQ 499
SF+VT SDGRT+ SN AVPAGW FGQTF GGQ
Sbjct: 194 SFQVTASDGRTVTSNGAVPAGWQFGQTFEGGQ 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,050,950
Number of Sequences: 1393205
Number of extensions: 10638761
Number of successful extensions: 37304
Number of sequences better than 10.0: 173
Number of HSP's better than 10.0 without gapping: 33318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37295
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
