Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002267A_C01 KMC002267A_c01
(639 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN77144.1| fiber protein Fb1 [Gossypium barbadense] 115 4e-26
ref|NP_180317.1| putative calcium binding protein; protein id: A... 105 5e-22
ref|NP_196037.2| EF - hand Calcium binding protein - like; prote... 90 2e-17
ref|NP_187641.2| unknown protein; protein id: At3g10300.1, suppo... 85 9e-16
emb|CAB63845.1| putative cysteine protease [Pisum sativum] 75 1e-12
>gb|AAN77144.1| fiber protein Fb1 [Gossypium barbadense]
Length = 109
Score = 115 bits (288), Expect(2) = 4e-26
Identities = 57/79 (72%), Positives = 66/79 (83%)
Frame = -2
Query: 638 GKIDPLELRDALYGIGYAVPGSVLQLLLSKYSDGTGRRVELGFDSFVECGMIIKGLTDQF 459
GKID +ELRDALY +GYA+P SVLQLL+SKY +G L FDSFVECGMI+KGLT++F
Sbjct: 26 GKIDLMELRDALYSLGYAIPPSVLQLLISKYDNG------LNFDSFVECGMIVKGLTEKF 79
Query: 458 KEKDTRYTGSATLSYDAFM 402
KEKD YTGSATLSYD+FM
Sbjct: 80 KEKDPGYTGSATLSYDSFM 98
Score = 24.6 bits (52), Expect(2) = 4e-26
Identities = 10/11 (90%), Positives = 11/11 (99%)
Frame = -3
Query: 400 SMVIPFLVSYD 368
S+VIPFLVSYD
Sbjct: 99 SLVIPFLVSYD 109
>ref|NP_180317.1| putative calcium binding protein; protein id: At2g27480.1
[Arabidopsis thaliana] gi|25407902|pir||D84673 probable
calcium binding protein [imported] - Arabidopsis
thaliana gi|4314390|gb|AAD15600.1| putative calcium
binding protein [Arabidopsis thaliana]
Length = 186
Score = 105 bits (262), Expect(2) = 5e-22
Identities = 48/80 (60%), Positives = 64/80 (80%)
Frame = -2
Query: 638 GKIDPLELRDALYGIGYAVPGSVLQLLLSKYSDGTGRRVELGFDSFVECGMIIKGLTDQF 459
GK++ +LRDA Y +G +P SV QL++S++ DGTG+ V+L FDSF+ECGMI+KGLT++F
Sbjct: 97 GKMNSTQLRDAFYNLGCVLPTSVHQLIVSQFDDGTGKTVDLCFDSFLECGMIVKGLTEKF 156
Query: 458 KEKDTRYTGSATLSYDAFML 399
+E D YTG ATLSYD FML
Sbjct: 157 RENDPGYTGYATLSYDVFML 176
Score = 20.8 bits (42), Expect(2) = 5e-22
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = -3
Query: 397 MVIPFLVSYD 368
MVIPF+ +YD
Sbjct: 177 MVIPFIATYD 186
>ref|NP_196037.2| EF - hand Calcium binding protein - like; protein id: At5g04170.1,
supported by cDNA: gi_19698990 [Arabidopsis thaliana]
gi|9955572|emb|CAC05499.1| EF-hand Calcium binding
protein-like [Arabidopsis thaliana]
gi|19698991|gb|AAL91231.1| EF-hand calcium binding
protein-like [Arabidopsis thaliana]
Length = 354
Score = 90.1 bits (222), Expect = 2e-17
Identities = 41/80 (51%), Positives = 60/80 (74%)
Frame = -2
Query: 638 GKIDPLELRDALYGIGYAVPGSVLQLLLSKYSDGTGRRVELGFDSFVECGMIIKGLTDQF 459
G+ID ELRDAL +G++V VL LL+SK+ G+ + +D+F+EC + +KGLT++F
Sbjct: 267 GRIDVNELRDALLSLGFSVSPVVLDLLVSKFDKSGGKNRAIEYDNFIECCLTVKGLTEKF 326
Query: 458 KEKDTRYTGSATLSYDAFML 399
KEKDT Y+GSAT +Y++FML
Sbjct: 327 KEKDTAYSGSATFNYESFML 346
>ref|NP_187641.2| unknown protein; protein id: At3g10300.1, supported by cDNA:
gi_17064843 [Arabidopsis thaliana]
gi|17064844|gb|AAL32576.1| Unknown protein [Arabidopsis
thaliana]
Length = 335
Score = 84.7 bits (208), Expect = 9e-16
Identities = 39/80 (48%), Positives = 57/80 (70%)
Frame = -2
Query: 638 GKIDPLELRDALYGIGYAVPGSVLQLLLSKYSDGTGRRVELGFDSFVECGMIIKGLTDQF 459
G+ID ELRDAL +G++V +L LL+SK+ GR + +D+F+EC + +KGLT++F
Sbjct: 248 GRIDTNELRDALMSLGFSVSPVILDLLVSKFDKSGGRNRAIEYDNFIECCLTVKGLTEKF 307
Query: 458 KEKDTRYTGSATLSYDAFML 399
KEKDT +GSA +Y+ FML
Sbjct: 308 KEKDTALSGSAIFNYENFML 327
>emb|CAB63845.1| putative cysteine protease [Pisum sativum]
Length = 286
Score = 74.7 bits (182), Expect = 1e-12
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = -2
Query: 638 GKIDPLELRDALYGIGYAVPGSVLQLLLSKYSDGTGRRVELGFDSFVECGMIIKGLTDQF 459
G+ID ELRDAL +GYAV +VL LL+SK+ G+ + +D+F+EC + +KGLTD+F
Sbjct: 208 GQIDSNELRDALLSLGYAVSPTVLDLLVSKFDKTGGKHKAVEYDNFIECCLTVKGLTDKF 267
Query: 458 KEKDT 444
KEKDT
Sbjct: 268 KEKDT 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 540,820,354
Number of Sequences: 1393205
Number of extensions: 11657393
Number of successful extensions: 27794
Number of sequences better than 10.0: 136
Number of HSP's better than 10.0 without gapping: 26763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27756
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
