Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002266A_C01 KMC002266A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174638.2| chloroplast lumen common protein family; protei... 152 3e-36
pir||C86461 F14M2.10 protein - Arabidopsis thaliana gi|9665092|g... 152 3e-36
dbj|BAB90167.1| P0408G07.13 [Oryza sativa (japonica cultivar-gro... 116 1e-25
gb|AAL31080.1|AC091749_9 unknown protein [Oryza sativa] gi|22655... 80 2e-14
ref|NP_566847.1| chloroplast lumen common protein family; protei... 73 2e-12
>ref|NP_174638.2| chloroplast lumen common protein family; protein id: At1g33780.1,
supported by cDNA: gi_17065471, supported by cDNA:
gi_20148514 [Arabidopsis thaliana]
gi|17065472|gb|AAL32890.1| Unknown protein [Arabidopsis
thaliana] gi|20148515|gb|AAM10148.1| unknown protein
[Arabidopsis thaliana]
Length = 325
Score = 152 bits (383), Expect = 3e-36
Identities = 72/96 (75%), Positives = 82/96 (85%)
Frame = -1
Query: 511 EEVIPGLCFGARNSLDSAAALVKKGILRPHDCSFFVGYAGWQMDQLRDEIESNYWHVAAC 332
EEV+PGL FG RNSLD AA LVKKG+L+P + FFVGYAGWQ+DQLR+EIES+YWHVAAC
Sbjct: 230 EEVMPGLNFGTRNSLDEAAVLVKKGVLKPQEFRFFVGYAGWQLDQLREEIESDYWHVAAC 289
Query: 331 GSSLLCGALSDPSESLWEEILQLMGGHYSELSRKPE 224
S L+CGA SE+LWEEILQLMGG YSELSRKP+
Sbjct: 290 SSDLICGA---SSENLWEEILQLMGGQYSELSRKPK 322
>pir||C86461 F14M2.10 protein - Arabidopsis thaliana
gi|9665092|gb|AAF97283.1|AC010164_5 Unknown protein
[Arabidopsis thaliana]
Length = 341
Score = 152 bits (383), Expect = 3e-36
Identities = 72/96 (75%), Positives = 82/96 (85%)
Frame = -1
Query: 511 EEVIPGLCFGARNSLDSAAALVKKGILRPHDCSFFVGYAGWQMDQLRDEIESNYWHVAAC 332
EEV+PGL FG RNSLD AA LVKKG+L+P + FFVGYAGWQ+DQLR+EIES+YWHVAAC
Sbjct: 246 EEVMPGLNFGTRNSLDEAAVLVKKGVLKPQEFRFFVGYAGWQLDQLREEIESDYWHVAAC 305
Query: 331 GSSLLCGALSDPSESLWEEILQLMGGHYSELSRKPE 224
S L+CGA SE+LWEEILQLMGG YSELSRKP+
Sbjct: 306 SSDLICGA---SSENLWEEILQLMGGQYSELSRKPK 338
>dbj|BAB90167.1| P0408G07.13 [Oryza sativa (japonica cultivar-group)]
gi|21328042|dbj|BAC00627.1| P0434C04.2 [Oryza sativa
(japonica cultivar-group)]
Length = 354
Score = 116 bits (291), Expect = 1e-25
Identities = 50/96 (52%), Positives = 68/96 (70%)
Frame = -1
Query: 511 EEVIPGLCFGARNSLDSAAALVKKGILRPHDCSFFVGYAGWQMDQLRDEIESNYWHVAAC 332
EEV PG+CFG R L+ A+AL+K G ++P D +F+VGY+ W DQL EI+ YWHV +C
Sbjct: 255 EEVSPGVCFGFRTDLEKASALLKSGAVKPEDLNFYVGYSAWDYDQLLSEIDQGYWHVTSC 314
Query: 331 GSSLLCGALSDPSESLWEEILQLMGGHYSELSRKPE 224
S L+ +L+ LW EIL+LMGG Y+ELS+KP+
Sbjct: 315 SSGLISDSLATDPSCLWTEILKLMGGQYAELSQKPK 350
>gb|AAL31080.1|AC091749_9 unknown protein [Oryza sativa] gi|22655742|gb|AAN04159.1| Unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 296
Score = 79.7 bits (195), Expect = 2e-14
Identities = 37/85 (43%), Positives = 55/85 (64%)
Frame = -1
Query: 511 EEVIPGLCFGARNSLDSAAALVKKGILRPHDCSFFVGYAGWQMDQLRDEIESNYWHVAAC 332
+EV+PG+ +G R S+ AA LVK+G++ D FF G+ GW+ +QLRDE+ + W VAAC
Sbjct: 208 DEVMPGVHYGTRESVGCAAELVKRGVVGVRDFRFFDGFCGWEREQLRDEVRAGLWRVAAC 267
Query: 331 GSSLLCGALSDPSESLWEEILQLMG 257
++L G + LWEE+ L+G
Sbjct: 268 SPAVL-GLATVVKGGLWEEVQGLVG 291
>ref|NP_566847.1| chloroplast lumen common protein family; protein id: At3g29240.1,
supported by cDNA: 121435., supported by cDNA:
gi_19310483 [Arabidopsis thaliana]
gi|9293917|dbj|BAB01820.1|
emb|CAB72194.1~gene_id:MXO21.9~similar to unknown
protein [Arabidopsis thaliana]
gi|19310484|gb|AAL84976.1| AT3g29240/MXO21_9
[Arabidopsis thaliana] gi|21537141|gb|AAM61482.1|
unknown [Arabidopsis thaliana]
gi|22654969|gb|AAM98077.1| AT3g29240/MXO21_9
[Arabidopsis thaliana] gi|28416521|gb|AAO42791.1|
AT3g29240/MXO21_9 [Arabidopsis thaliana]
Length = 317
Score = 73.2 bits (178), Expect = 2e-12
Identities = 34/84 (40%), Positives = 53/84 (62%)
Frame = -1
Query: 508 EVIPGLCFGARNSLDSAAALVKKGILRPHDCSFFVGYAGWQMDQLRDEIESNYWHVAACG 329
+V+ GL +G R S+ AA +VK+ ++ + FF GY GW+ +QL+ EI YW VAAC
Sbjct: 227 QVMKGLYYGTRESVGLAAEMVKRNLVGRSELRFFDGYCGWEKEQLKAEILGGYWTVAACS 286
Query: 328 SSLLCGALSDPSESLWEEILQLMG 257
S+++ + S LW+E+L L+G
Sbjct: 287 STVVELGSAVQSHGLWDEVLGLIG 310
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,350,557
Number of Sequences: 1393205
Number of extensions: 9028261
Number of successful extensions: 21931
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 21421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21919
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
