Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002263A_C01 KMC002263A_c01
(1127 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK55780.1|AC079038_14 Putative 40S ribosomal protein; contai... 402 e-111
ref|NP_198403.1| 40S ribosomal protein S3; protein id: At5g35530... 400 e-110
ref|NP_190955.1| 40S ribosomal protein S3, putative; protein id:... 398 e-110
gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aesti... 398 e-109
ref|NP_180719.1| 40S ribosomal protein S3, putative; protein id:... 394 e-108
>gb|AAK55780.1|AC079038_14 Putative 40S ribosomal protein; contains C-terminal domain [Oryza
sativa]
Length = 233
Score = 402 bits (1032), Expect = e-111
Identities = 206/233 (88%), Positives = 217/233 (92%), Gaps = 1/233 (0%)
Frame = -3
Query: 1056 TQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQAVLGEK 877
TQ+SKKRKFVADGVFFAELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLGEK
Sbjct: 5 TQISKKRKFVADGVFFAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEK 64
Query: 876 GRRIRELTSIVQKRFKFPENNVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 697
GRRIRELTS+VQKRF FPEN VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV
Sbjct: 65 GRRIRELTSVVQKRFNFPENGVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGV 124
Query: 696 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVL 517
LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSG PV YIDSAVRHVLLRQGVL
Sbjct: 125 LRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGYPVNLYIDSAVRHVLLRQGVL 184
Query: 516 GIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIEVPVA 361
GIKVKIMLDWDPKGKQGP TPLPD+VTIH PK+E+E+ +P+ E+PVA
Sbjct: 185 GIKVKIMLDWDPKGKQGPMTPLPDLVTIHAPKDEDEFSKPLTA-----EIPVA 232
>ref|NP_198403.1| 40S ribosomal protein S3; protein id: At5g35530.1, supported by cDNA:
10394., supported by cDNA: gi_16604317, supported by
cDNA: gi_20466074 [Arabidopsis thaliana]
gi|9758155|dbj|BAB08712.1| 40S ribosomal protein S3
[Arabidopsis thaliana] gi|16604318|gb|AAL24165.1|
AT5g35530/MOK9_14 [Arabidopsis thaliana]
gi|20466075|gb|AAM19959.1| AT5g35530/MOK9_14 [Arabidopsis
thaliana]
Length = 248
Score = 400 bits (1028), Expect = e-110
Identities = 203/235 (86%), Positives = 218/235 (92%), Gaps = 1/235 (0%)
Frame = -3
Query: 1062 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQAVLG 883
MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 882 EKGRRIRELTSIVQKRFKFPENNVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 703
EKGRRIRELTS+VQKRFKFP+++VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 702 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 523
GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180
Query: 522 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEY-RPVAVLANDIEVPVA 361
VLG+KVKIMLDWDPKGKQGP TPLPD+V IHTPKE++ Y P V+ VP A
Sbjct: 181 VLGLKVKIMLDWDPKGKQGPMTPLPDVVIIHTPKEDDVYIAPAQVVTQAAFVPEA 235
>ref|NP_190955.1| 40S ribosomal protein S3, putative; protein id: At3g53870.1,
supported by cDNA: 9568., supported by cDNA: gi_14334697,
supported by cDNA: gi_16226457, supported by cDNA:
gi_16323403 [Arabidopsis thaliana]
gi|11275277|pir||T45927 ribosomal protein S3a homolog -
Arabidopsis thaliana gi|7630007|emb|CAB88349.1| ribosomal
protein S3a homolog [Arabidopsis thaliana]
gi|14334698|gb|AAK59527.1| putative ribosomal protein S3a
homolog [Arabidopsis thaliana]
gi|16226458|gb|AAL16173.1|AF428405_1 AT3g53870/F5K20_170
[Arabidopsis thaliana] gi|16323404|gb|AAL15196.1|
putative ribosomal protein S3a homolog [Arabidopsis
thaliana] gi|21618068|gb|AAM67118.1| ribosomal protein
S3a-like protein [Arabidopsis thaliana]
Length = 249
Score = 398 bits (1023), Expect = e-110
Identities = 202/227 (88%), Positives = 213/227 (92%), Gaps = 1/227 (0%)
Frame = -3
Query: 1062 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQAVLG 883
M TQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 882 EKGRRIRELTSIVQKRFKFPENNVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 703
EKGRRIRELTS+VQKRFKFP ++VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 702 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 523
GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YIDSAVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHVLLRQG 180
Query: 522 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEE-YRPVAVLA 385
VLGIKVK+MLDWDPKG GPKTPLPD+V IH+PKEEE Y P V A
Sbjct: 181 VLGIKVKVMLDWDPKGISGPKTPLPDVVIIHSPKEEEAIYAPAQVAA 227
>gb|AAM92710.1| putative 40S ribosomal protein S3 [Triticum aestivum]
Length = 227
Score = 398 bits (1022), Expect = e-109
Identities = 201/225 (89%), Positives = 213/225 (94%)
Frame = -3
Query: 1062 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQAVLG 883
MATQ+SKK+KFV+DGVF+AELNE+LTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 882 EKGRRIRELTSIVQKRFKFPENNVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 703
EKGRRIRELTS+VQKRF F EN VELYAEKV NRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSVVQKRFNFLENGVELYAEKVVNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 702 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 523
GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPV +YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDAAVRHVLLRQG 180
Query: 522 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYRPVAVL 388
VLGIKVKIMLDWDPKGK GP TPLPD+VTIH PKEE E RP A++
Sbjct: 181 VLGIKVKIMLDWDPKGKLGPTTPLPDLVTIHPPKEENELRPPALV 225
>ref|NP_180719.1| 40S ribosomal protein S3, putative; protein id: At2g31610.1,
supported by cDNA: gi_14190418, supported by cDNA:
gi_15028252, supported by cDNA: gi_15450570, supported by
cDNA: gi_15451083, supported by cDNA: gi_20148376,
supported by cDNA: gi_20258906 [Arabidopsis thaliana]
gi|25294441|pir||H84722 hypothetical protein At2g31610
[imported] - Arabidopsis thaliana
gi|4582468|gb|AAD24852.1| 40S ribosomal protein; contains
C-terminal domain [Arabidopsis thaliana]
gi|14190419|gb|AAK55690.1|AF378887_1 At2g31610/T9H9.13
[Arabidopsis thaliana] gi|15028253|gb|AAK76715.1|
putative 40S ribosomal protein; contains C-terminal
domain [Arabidopsis thaliana] gi|15450571|gb|AAK96463.1|
At2g31610/T9H9.13 [Arabidopsis thaliana]
gi|15451084|gb|AAK96813.1| 40S ribosomal protein
[Arabidopsis thaliana] gi|20148377|gb|AAM10079.1| 40S
ribosomal protein; contains C-terminal domain
[Arabidopsis thaliana] gi|20258907|gb|AAM14147.1|
putative 40S ribosomal protein [Arabidopsis thaliana]
Length = 250
Score = 394 bits (1013), Expect = e-108
Identities = 199/226 (88%), Positives = 211/226 (93%)
Frame = -3
Query: 1062 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVRTEIIIRATRTQAVLG 883
MATQ+SKKRKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTP+RTEIIIRATRTQ VLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 882 EKGRRIRELTSIVQKRFKFPENNVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 703
EKGRRIRELTS+VQKRFKFP ++VELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACY 120
Query: 702 GVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQG 523
GVLRFVMESGAKGCEVIVSGKLRA RAKSMKFKDGYM+SSGQP K+YID+AVRHVLLRQG
Sbjct: 121 GVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHVLLRQG 180
Query: 522 VLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYRPVAVLA 385
VLGIKVKIMLDWDP GK GPKTPLPD+V IH PK++ Y A A
Sbjct: 181 VLGIKVKIMLDWDPTGKSGPKTPLPDVVIIHAPKDDVVYSAPAQAA 226
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 990,906,186
Number of Sequences: 1393205
Number of extensions: 23423994
Number of successful extensions: 70395
Number of sequences better than 10.0: 233
Number of HSP's better than 10.0 without gapping: 65485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70133
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 68634655500
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
