Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002249A_C02 KMC002249A_c02
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB61630.1| putative protein phosphatase [Rubus idaeus] 215 3e-55
gb|AAL33610.1|AF439974_1 SGT1 [Hordeum vulgare] 209 2e-53
ref|NP_192865.1| putative protein; protein id: At4g11260.1, supp... 204 7e-52
gb|AAF18438.1|AF192467_1 Sgt1 [Oryza sativa] 203 2e-51
dbj|BAB19060.1| Sgt1 [Oryza sativa (japonica cultivar-group)] 203 2e-51
>emb|CAB61630.1| putative protein phosphatase [Rubus idaeus]
Length = 327
Score = 215 bits (548), Expect = 3e-55
Identities = 105/133 (78%), Positives = 120/133 (89%), Gaps = 1/133 (0%)
Frame = -1
Query: 599 STKIEIRLGKAEPIHWNSLEFTREVAVSQRANISSVIGSQRPTYPSSKPKK-DWDKLEAQ 423
STK+EIRL KAEP HW SLEF+++ V + N + VIG+QRP+YPSSKPK+ DWDKLEAQ
Sbjct: 195 STKVEIRLAKAEPNHWTSLEFSKDNPVPLKVN-APVIGAQRPSYPSSKPKRVDWDKLEAQ 253
Query: 422 VKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVE 243
VKKEEKDEKLDGDAALNKFF++IY+DADEDTRRAM+KSFVESNGTVLSTNWKEVG KKVE
Sbjct: 254 VKKEEKDEKLDGDAALNKFFQDIYKDADEDTRRAMRKSFVESNGTVLSTNWKEVGNKKVE 313
Query: 242 GSPPDGMELRKWE 204
GS PDGME++KWE
Sbjct: 314 GSAPDGMEMKKWE 326
>gb|AAL33610.1|AF439974_1 SGT1 [Hordeum vulgare]
Length = 373
Score = 209 bits (532), Expect = 2e-53
Identities = 100/133 (75%), Positives = 114/133 (85%)
Frame = -1
Query: 599 STKIEIRLGKAEPIHWNSLEFTREVAVSQRANISSVIGSQRPTYPSSKPKKDWDKLEAQV 420
STK+EIRL KAEP+ W SL++T + Q+ N+ + +QRP+YPSSK KKDWDKLEA+V
Sbjct: 242 STKVEIRLAKAEPVTWTSLDYTGKPKAPQKINVPAE-SAQRPSYPSSKSKKDWDKLEAEV 300
Query: 419 KKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEG 240
KK+EKDEKLDGDAALNKFFREIY DADED RRAM KSFVESNGTVLSTNWK+VG K VEG
Sbjct: 301 KKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGKKTVEG 360
Query: 239 SPPDGMELRKWEY 201
SPPDGMEL+KWEY
Sbjct: 361 SPPDGMELKKWEY 373
>ref|NP_192865.1| putative protein; protein id: At4g11260.1, supported by cDNA:
152712., supported by cDNA: gi_13877932, supported by
cDNA: gi_16226817, supported by cDNA: gi_17017309
[Arabidopsis thaliana] gi|7486697|pir||T13017
hypothetical protein F8L21.50 - Arabidopsis thaliana
gi|5596472|emb|CAB51410.1| putative protein [Arabidopsis
thaliana] gi|7267825|emb|CAB81227.1| putative protein
[Arabidopsis thaliana]
gi|13877933|gb|AAK44044.1|AF370229_1 unknown protein
[Arabidopsis thaliana]
gi|16226818|gb|AAL16270.1|AF428340_1 AT4g11260/F8L21_50
[Arabidopsis thaliana]
gi|17017310|gb|AAL33612.1|AF439976_1 SGT1b [Arabidopsis
thaliana] gi|21553597|gb|AAM62690.1| SGT1a [Arabidopsis
thaliana] gi|23297702|gb|AAN12904.1| unknown protein
[Arabidopsis thaliana]
Length = 358
Score = 204 bits (519), Expect = 7e-52
Identities = 99/133 (74%), Positives = 112/133 (83%)
Frame = -1
Query: 599 STKIEIRLGKAEPIHWNSLEFTREVAVSQRANISSVIGSQRPTYPSSKPKKDWDKLEAQV 420
STK+EIRL KAE I W SLE+ + +V + N+SS + SQRP YPSSKP KDWDKLEA+V
Sbjct: 227 STKVEIRLAKAEIITWASLEYGKGQSVLPKPNVSSAL-SQRPVYPSSKPAKDWDKLEAEV 285
Query: 419 KKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEG 240
KK+EKDEKLDGDAA+NKFF +IY ADED RRAM KSF ESNGTVLSTNWKEVGTKKVE
Sbjct: 286 KKQEKDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTNWKEVGTKKVES 345
Query: 239 SPPDGMELRKWEY 201
+PPDGMEL+KWEY
Sbjct: 346 TPPDGMELKKWEY 358
>gb|AAF18438.1|AF192467_1 Sgt1 [Oryza sativa]
Length = 367
Score = 203 bits (516), Expect = 2e-51
Identities = 97/133 (72%), Positives = 112/133 (83%)
Frame = -1
Query: 599 STKIEIRLGKAEPIHWNSLEFTREVAVSQRANISSVIGSQRPTYPSSKPKKDWDKLEAQV 420
STK+EIRL KAE I W SL++ ++ + I +QRP+YPSSK KKDWDKLEA+V
Sbjct: 235 STKVEIRLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQRPSYPSSKSKKDWDKLEAEV 294
Query: 419 KKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEG 240
KKEEK+EKL+GDAALNKFFR+IY DADED RRAM KSFVESNGTVLSTNWK+VG+KKVEG
Sbjct: 295 KKEEKEEKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVEG 354
Query: 239 SPPDGMELRKWEY 201
SPPDGMEL+KWEY
Sbjct: 355 SPPDGMELKKWEY 367
>dbj|BAB19060.1| Sgt1 [Oryza sativa (japonica cultivar-group)]
Length = 367
Score = 203 bits (516), Expect = 2e-51
Identities = 97/133 (72%), Positives = 112/133 (83%)
Frame = -1
Query: 599 STKIEIRLGKAEPIHWNSLEFTREVAVSQRANISSVIGSQRPTYPSSKPKKDWDKLEAQV 420
STK+EIRL KAE I W SL++ ++ + I +QRP+YPSSK KKDWDKLEA+V
Sbjct: 235 STKVEIRLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQRPSYPSSKSKKDWDKLEAEV 294
Query: 419 KKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVEG 240
KKEEK+EKL+GDAALNKFFR+IY DADED RRAM KSFVESNGTVLSTNWK+VG+KKVEG
Sbjct: 295 KKEEKEEKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVEG 354
Query: 239 SPPDGMELRKWEY 201
SPPDGMEL+KWEY
Sbjct: 355 SPPDGMELKKWEY 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,328,649
Number of Sequences: 1393205
Number of extensions: 11412395
Number of successful extensions: 32259
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 30659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32103
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
