Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002244A_C01 KMC002244A_c01
(952 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC09928.1| hypothetical protein [Catharanthus roseus] 136 5e-31
ref|NP_565660.1| expressed protein; protein id: At2g27830.1, sup... 134 2e-30
ref|NP_194007.1| similar to selenium-binding protein-like; prote... 67 4e-10
gb|AAL16139.1|AF428307_1 At1g70780/F5A18_4 [Arabidopsis thaliana] 54 4e-06
dbj|BAB33412.1| putative senescence-associated protein [Pisum sa... 54 4e-06
>emb|CAC09928.1| hypothetical protein [Catharanthus roseus]
Length = 196
Score = 136 bits (342), Expect = 5e-31
Identities = 70/133 (52%), Positives = 90/133 (67%)
Frame = -1
Query: 949 KLLLKVTVLGSLGPVQVLMRPESTVGELVAAVARQYVKEARRPILPTNDASDFDLHYSQF 770
KLLL VT++GS+GP+QVL PE+TV +L++A RQY KE RRPIL + DA+ FDLHYSQF
Sbjct: 78 KLLLNVTIMGSVGPIQVLTSPEATVEDLISAALRQYSKEGRRPILKSTDAAGFDLHYSQF 137
Query: 769 SLESLHREEKLVELGSRNFFMCPRKKLAATTPAAVEGGGVTLTTAFASCAKEAGKGSGRD 590
SLESLHREEKL+ LGSRNFF+CP++ G T + + C+KEA K +
Sbjct: 138 SLESLHREEKLISLGSRNFFLCPKR------------CGAEPTASSSGCSKEADKATKT- 184
Query: 589 GGGFGWLKLLRFM 551
G WLK + +
Sbjct: 185 --GTPWLKFMELL 195
>ref|NP_565660.1| expressed protein; protein id: At2g27830.1, supported by cDNA:
33700., supported by cDNA: gi_17473712 [Arabidopsis
thaliana] gi|25407927|pir||E84677 hypothetical protein
At2g27830 [imported] - Arabidopsis thaliana
gi|3860249|gb|AAC73017.1| expressed protein [Arabidopsis
thaliana] gi|17473713|gb|AAL38309.1| unknown protein
[Arabidopsis thaliana] gi|21386999|gb|AAM47903.1|
unknown protein [Arabidopsis thaliana]
gi|21592892|gb|AAM64842.1| unknown [Arabidopsis
thaliana]
Length = 190
Score = 134 bits (337), Expect = 2e-30
Identities = 73/132 (55%), Positives = 90/132 (67%)
Frame = -1
Query: 949 KLLLKVTVLGSLGPVQVLMRPESTVGELVAAVARQYVKEARRPILPTNDASDFDLHYSQF 770
KLLL VTV GSLG VQ+++ PESTV +L+ A RQYVKEARRP LP ++ S FDLHYSQF
Sbjct: 71 KLLLNVTVQGSLGAVQIIISPESTVSDLIDAAVRQYVKEARRPFLPESEPSRFDLHYSQF 130
Query: 769 SLESLHREEKLVELGSRNFFMCPRKKLAATTPAAVEGGGVTLTTAFASCAKEAGKGSGRD 590
SLES+ R+EKL+ LGSRNFF+C RK+ GG + + SC+KEA K +
Sbjct: 131 SLESIVRDEKLISLGSRNFFLCGRKE---------TGGFIGCGLSSESCSKEAEKVAKT- 180
Query: 589 GGGFGWLKLLRF 554
GF WLK + F
Sbjct: 181 --GFHWLKFMGF 190
>ref|NP_194007.1| similar to selenium-binding protein-like; protein id: At4g22760.1
[Arabidopsis thaliana] gi|7486881|pir||T04571
hypothetical protein T12H17.150 - Arabidopsis thaliana
gi|2827553|emb|CAA16561.1| predicted protein
[Arabidopsis thaliana] gi|7269122|emb|CAB79231.1|
predicted protein [Arabidopsis thaliana]
Length = 889
Score = 67.0 bits (162), Expect = 4e-10
Identities = 38/91 (41%), Positives = 55/91 (59%)
Frame = -1
Query: 952 PKLLLKVTVLGSLGPVQVLMRPESTVGELVAAVARQYVKEARRPILPTNDASDFDLHYSQ 773
PK+++ V V GS GPV+ +++ V E + V +Y KE R P L + A F+LH S
Sbjct: 122 PKVIISVAVEGSPGPVRAMVKLSCNVEETIKIVVDKYCKEGRTPKLDRDSA--FELHQSH 179
Query: 772 FSLESLHREEKLVELGSRNFFMCPRKKLAAT 680
FS++ L + E + ELGSR+F+M RKK T
Sbjct: 180 FSIQCLEKREIIGELGSRSFYM--RKKAPET 208
>gb|AAL16139.1|AF428307_1 At1g70780/F5A18_4 [Arabidopsis thaliana]
Length = 149
Score = 53.9 bits (128), Expect = 4e-06
Identities = 27/82 (32%), Positives = 47/82 (56%)
Frame = -1
Query: 949 KLLLKVTVLGSLGPVQVLMRPESTVGELVAAVARQYVKEARRPILPTNDASDFDLHYSQF 770
++L+ VTVLGS GP++ + + V ++ + Y +E R P+L +D +DF L+
Sbjct: 17 RILISVTVLGSAGPIRFVAYEDDLVASVIDTALKGYAREGRLPLL-GSDFNDFLLYCPMV 75
Query: 769 SLESLHREEKLVELGSRNFFMC 704
E+L + + LG+RNF +C
Sbjct: 76 GPEALSTWDAIGSLGARNFMLC 97
>dbj|BAB33412.1| putative senescence-associated protein [Pisum sativum]
Length = 221
Score = 53.9 bits (128), Expect = 4e-06
Identities = 29/104 (27%), Positives = 53/104 (50%)
Frame = -1
Query: 949 KLLLKVTVLGSLGPVQVLMRPESTVGELVAAVARQYVKEARRPILPTNDASDFDLHYSQF 770
+LL+ + V GS GP++ +++ E V ++ + Y +E R P+L D F L+
Sbjct: 53 RLLISINVFGSAGPIRFVVKEEELVAAVIDTALKSYAREGRLPVL-GGDIRTFALYCPLV 111
Query: 769 SLESLHREEKLVELGSRNFFMCPRKKLAATTPAAVEGGGVTLTT 638
++L + + +G+RNF +C +K A T A G G + +
Sbjct: 112 GSDALSPWDTIGSVGARNFMLC-KKPQATTGDEAANGTGTEVVS 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 876,920,338
Number of Sequences: 1393205
Number of extensions: 21793184
Number of successful extensions: 98026
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 75534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95492
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 53523731176
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
