Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002242A_C01 KMC002242A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA94084.1| NAD-dependent sorbitol dehydrogenase [Prunus per... 204 6e-52
gb|AAK71492.1| sorbitol dehydrogenase [Prunus cerasus] 203 1e-51
gb|AAM62446.1| sorbitol dehydrogenase-like protein [Arabidopsis ... 196 1e-49
ref|NP_200010.1| sorbitol dehydrogenase-like protein; protein id... 196 1e-49
gb|AAL37296.1|AF323507_1 sorbitol dehydrogenase [Malus x domestica] 195 4e-49
>dbj|BAA94084.1| NAD-dependent sorbitol dehydrogenase [Prunus persica]
Length = 367
Score = 204 bits (519), Expect = 6e-52
Identities = 95/106 (89%), Positives = 103/106 (96%)
Frame = -3
Query: 549 FDCAGFDKTMSTALTATKPGGRVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLC 370
FDC GF+KTMSTAL+AT+PGG+VCLVGMGH MTVPLTPAAAREVDV+GIFRYKNTWPLC
Sbjct: 262 FDCVGFNKTMSTALSATRPGGKVCLVGMGHGVMTVPLTPAAAREVDVVGIFRYKNTWPLC 321
Query: 369 LEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNI 232
LEFLR+GKIDVKPLITHRFGFSQKE+EEAFETSARGGNAIKVMFN+
Sbjct: 322 LEFLRTGKIDVKPLITHRFGFSQKEIEEAFETSARGGNAIKVMFNL 367
>gb|AAK71492.1| sorbitol dehydrogenase [Prunus cerasus]
Length = 368
Score = 203 bits (516), Expect = 1e-51
Identities = 94/106 (88%), Positives = 103/106 (96%)
Frame = -3
Query: 549 FDCAGFDKTMSTALTATKPGGRVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLC 370
FDC GF+KTMSTAL+AT+PGG+VCLVGMGH MTVPLTPAAAREVDV+GIFRYKNTWPLC
Sbjct: 263 FDCVGFNKTMSTALSATRPGGKVCLVGMGHGVMTVPLTPAAAREVDVVGIFRYKNTWPLC 322
Query: 369 LEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNI 232
LEFLR+GKIDVKPLITHRFGF+QKE+EEAFETSARGGNAIKVMFN+
Sbjct: 323 LEFLRTGKIDVKPLITHRFGFTQKEIEEAFETSARGGNAIKVMFNL 368
>gb|AAM62446.1| sorbitol dehydrogenase-like protein [Arabidopsis thaliana]
Length = 364
Score = 196 bits (499), Expect = 1e-49
Identities = 93/106 (87%), Positives = 100/106 (93%)
Frame = -3
Query: 549 FDCAGFDKTMSTALTATKPGGRVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLC 370
FDCAGF+KTMSTAL AT+ GG+VCLVGMGH MTVPLTPAAAREVDV+G+FRYKNTWPLC
Sbjct: 259 FDCAGFNKTMSTALAATRCGGKVCLVGMGHGIMTVPLTPAAAREVDVVGVFRYKNTWPLC 318
Query: 369 LEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNI 232
LEFL SGKIDVKPLITHRFGFSQKEVE+AFETSARG NAIKVMFN+
Sbjct: 319 LEFLTSGKIDVKPLITHRFGFSQKEVEDAFETSARGSNAIKVMFNL 364
>ref|NP_200010.1| sorbitol dehydrogenase-like protein; protein id: At5g51970.1,
supported by cDNA: 13875., supported by cDNA:
gi_13877796 [Arabidopsis thaliana]
gi|10177732|dbj|BAB11045.1| sorbitol dehydrogenase-like
protein [Arabidopsis thaliana]
gi|13877797|gb|AAK43976.1|AF370161_1 putative sorbitol
dehydrogenase [Arabidopsis thaliana]
gi|22136876|gb|AAM91782.1| putative sorbitol
dehydrogenase [Arabidopsis thaliana]
Length = 364
Score = 196 bits (499), Expect = 1e-49
Identities = 93/106 (87%), Positives = 100/106 (93%)
Frame = -3
Query: 549 FDCAGFDKTMSTALTATKPGGRVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLC 370
FDCAGF+KTMSTAL AT+ GG+VCLVGMGH MTVPLTPAAAREVDV+G+FRYKNTWPLC
Sbjct: 259 FDCAGFNKTMSTALAATRCGGKVCLVGMGHGIMTVPLTPAAAREVDVVGVFRYKNTWPLC 318
Query: 369 LEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNI 232
LEFL SGKIDVKPLITHRFGFSQKEVE+AFETSARG NAIKVMFN+
Sbjct: 319 LEFLTSGKIDVKPLITHRFGFSQKEVEDAFETSARGSNAIKVMFNL 364
>gb|AAL37296.1|AF323507_1 sorbitol dehydrogenase [Malus x domestica]
Length = 367
Score = 195 bits (495), Expect = 4e-49
Identities = 90/106 (84%), Positives = 99/106 (92%)
Frame = -3
Query: 549 FDCAGFDKTMSTALTATKPGGRVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLC 370
FDC GF+KTMST L AT+PGG+VCLVGMGH MTVPLTPAAAREVDV+G+FRY+NTWPLC
Sbjct: 262 FDCVGFNKTMSTGLNATRPGGKVCLVGMGHGVMTVPLTPAAAREVDVVGVFRYQNTWPLC 321
Query: 369 LEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNI 232
LEFLRSGKIDVKPLITHRFGF++KEVEEAF TSARGGNAIKVMF +
Sbjct: 322 LEFLRSGKIDVKPLITHRFGFTEKEVEEAFATSARGGNAIKVMFKL 367
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,679,251
Number of Sequences: 1393205
Number of extensions: 10791594
Number of successful extensions: 32958
Number of sequences better than 10.0: 287
Number of HSP's better than 10.0 without gapping: 28443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32094
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
