Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002239A_C01 KMC002239A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK82969.1|AF276228_1 putative heme oxygenase 1 precursor [Pi... 122 5e-27
gb|AAK63012.1|AF320028_1 heme oxygenase 1 [Lycopersicon esculentum] 112 3e-24
gb|AAK52998.1|AF375414_1 At2g26670/F18A8.4 [Arabidopsis thaliana... 110 2e-23
ref|NP_180235.1| heme oxygenase 1 (HO1); protein id: At2g26670.1... 110 2e-23
gb|AAG42008.2|AF327418_1 putative heme oxygenase HO1 [Arabidopsi... 110 2e-23
>gb|AAK82969.1|AF276228_1 putative heme oxygenase 1 precursor [Pisum sativum]
gi|15076865|gb|AAK82970.1|AF276229_1 putative heme
oxygenase 1 precursor [Pisum sativum]
gi|15076867|gb|AAK82971.1|AF276230_1 putative heme
oxygenase 1 precursor [Pisum sativum]
Length = 283
Score = 122 bits (305), Expect = 5e-27
Identities = 69/118 (58%), Positives = 85/118 (71%), Gaps = 3/118 (2%)
Frame = +2
Query: 254 TVVSQIQSLYIIK---PRLSPPPPPHRQFRSIYFPTTRSLQQHRFRQMKSVVIVSATAAE 424
T + QI SL++ K P+LS + FRS +F + + K VIVSAT +E
Sbjct: 7 TALYQIHSLFLYKTNHPQLSLSQT--QSFRSNFFFQRKLSFELPRMPRKETVIVSATTSE 64
Query: 425 TARKRYPGESKGFVEEMRFVAMKLHTKDQAKEGEKEVTEPEEKAVTKWEPTVDGYLKF 598
+KR+PGE+KGFVEEMRFVAM+LHTKDQAKEGEKEV +PEE+AVTKWEPTVDGYL+F
Sbjct: 65 --KKRHPGEAKGFVEEMRFVAMRLHTKDQAKEGEKEVKKPEERAVTKWEPTVDGYLRF 120
>gb|AAK63012.1|AF320028_1 heme oxygenase 1 [Lycopersicon esculentum]
Length = 278
Score = 112 bits (281), Expect = 3e-24
Identities = 63/119 (52%), Positives = 80/119 (66%)
Frame = +2
Query: 242 MASATVVSQIQSLYIIKPRLSPPPPPHRQFRSIYFPTTRSLQQHRFRQMKSVVIVSATAA 421
MAS + +SQ Q L + KP+ + QF SI F ++ + VV+ + TAA
Sbjct: 1 MASISPLSQSQPL-LEKPQFTVLNKSQNQFFSIPFSRFTQSCNLSLKKSRMVVVSATTAA 59
Query: 422 ETARKRYPGESKGFVEEMRFVAMKLHTKDQAKEGEKEVTEPEEKAVTKWEPTVDGYLKF 598
E + KRYPGE+KGFVEEMRFVAMKLHTKDQAKEGEK EP ++ + KWEP+V+GYLKF
Sbjct: 60 EKSNKRYPGEAKGFVEEMRFVAMKLHTKDQAKEGEK---EPVDQPLAKWEPSVEGYLKF 115
>gb|AAK52998.1|AF375414_1 At2g26670/F18A8.4 [Arabidopsis thaliana] gi|22136554|gb|AAM91063.1|
At2g26670/F18A8.4 [Arabidopsis thaliana]
Length = 240
Score = 110 bits (274), Expect = 2e-23
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = +2
Query: 395 VVIVSATAAETARKRYPGESKGFVEEMRFVAMKLHTKDQAKEGEKEVTEPEEKAVTKWEP 574
VV+ + TAAE +KRYPGESKGFVEEMRFVAM+LHTKDQAKEGEKE EE+ V KWEP
Sbjct: 10 VVVAATTAAEKQKKRYPGESKGFVEEMRFVAMRLHTKDQAKEGEKETKSIEERPVAKWEP 69
Query: 575 TVDGYLKF 598
TV+GYL+F
Sbjct: 70 TVEGYLRF 77
>ref|NP_180235.1| heme oxygenase 1 (HO1); protein id: At2g26670.1, supported by cDNA:
33692., supported by cDNA: gi_4877396 [Arabidopsis
thaliana] gi|25370567|pir||T52457 heme oxygenase
(decyclizing) (EC 1.14.99.3) precursor, chloroplast
[validated] - Arabidopsis thaliana
gi|4530591|gb|AAD22107.1| heme oxygenase 1 [Arabidopsis
thaliana] gi|4530593|gb|AAD22108.1| heme oxygenase 1
[Arabidopsis thaliana] gi|4877362|dbj|BAA77758.1|
plastid heme oxygenase [Arabidopsis thaliana]
gi|4877397|dbj|BAA77759.1| plastid heme oxygenase
[Arabidopsis thaliana] gi|4883666|gb|AAB95301.2| heme
oxygenase 1 (HO1) [Arabidopsis thaliana]
gi|21592891|gb|AAM64841.1| heme oxygenase 1 (HO1)
[Arabidopsis thaliana] gi|26983816|gb|AAN86160.1|
putative heme oxygenase HO1 [Arabidopsis thaliana]
Length = 282
Score = 110 bits (274), Expect = 2e-23
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = +2
Query: 395 VVIVSATAAETARKRYPGESKGFVEEMRFVAMKLHTKDQAKEGEKEVTEPEEKAVTKWEP 574
VV+ + TAAE +KRYPGESKGFVEEMRFVAM+LHTKDQAKEGEKE EE+ V KWEP
Sbjct: 52 VVVAATTAAEKQKKRYPGESKGFVEEMRFVAMRLHTKDQAKEGEKETKSIEERPVAKWEP 111
Query: 575 TVDGYLKF 598
TV+GYL+F
Sbjct: 112 TVEGYLRF 119
>gb|AAG42008.2|AF327418_1 putative heme oxygenase HO1 [Arabidopsis thaliana]
Length = 268
Score = 110 bits (274), Expect = 2e-23
Identities = 51/68 (75%), Positives = 58/68 (85%)
Frame = +2
Query: 395 VVIVSATAAETARKRYPGESKGFVEEMRFVAMKLHTKDQAKEGEKEVTEPEEKAVTKWEP 574
VV+ + TAAE +KRYPGESKGFVEEMRFVAM+LHTKDQAKEGEKE EE+ V KWEP
Sbjct: 38 VVVAATTAAEKQKKRYPGESKGFVEEMRFVAMRLHTKDQAKEGEKETKSIEERPVAKWEP 97
Query: 575 TVDGYLKF 598
TV+GYL+F
Sbjct: 98 TVEGYLRF 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,924,590
Number of Sequences: 1393205
Number of extensions: 15741497
Number of successful extensions: 155552
Number of sequences better than 10.0: 1528
Number of HSP's better than 10.0 without gapping: 87620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134275
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
