Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002233A_C01 KMC002233A_c01
(713 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA95818.1| EST AU082548(E60543) corresponds to a region of ... 82 7e-15
ref|NP_198370.1| putative protein; protein id: At5g35200.1, supp... 54 3e-06
dbj|BAC10706.1| P0431H09.18 [Oryza sativa (japonica cultivar-gro... 42 0.006
gb|AAG37909.1|AF317732_1 CIA5 [Chlamydomonas reinhardtii] gi|118... 42 0.008
gb|AAF69494.1| nuclear receptor E78A [Drosophila melanogaster] 42 0.008
>dbj|BAA95818.1| EST AU082548(E60543) corresponds to a region of the predicted
gene.~Similar to Arabidopsis thaliana chromosome II BAC
F2I9 genomic sequence, unknown protein. (AC005560)
[Oryza sativa (japonica cultivar-group)]
Length = 580
Score = 82.0 bits (201), Expect = 7e-15
Identities = 53/115 (46%), Positives = 60/115 (52%), Gaps = 24/115 (20%)
Frame = -1
Query: 704 APAGAT---MQPTMHDPFFASNAMAAPHSVQMAAMSNQQQAFMYQQQ------------- 573
A AGA QP MHDPF+AS+ AAPH+VQM AM+ QQQAFM QQQ
Sbjct: 470 AGAGAAPMMQQPMMHDPFYASSGYAAPHNVQMTAMAQQQQAFMLQQQMMMAAAAAAAAAP 529
Query: 572 --------QQQQQMMMMPPQQPAANPFGNAYGGATVHPYGSGMPVQSYNPYTGLI 432
QQQQQ + P P NPF A A HPYG+ + N YTGLI
Sbjct: 530 PPQVFHHHQQQQQHLQANPANPFGNPF--AAAAAAHHPYGAA--AAAGNGYTGLI 580
>ref|NP_198370.1| putative protein; protein id: At5g35200.1, supported by cDNA:
gi_19698874 [Arabidopsis thaliana]
gi|8978352|dbj|BAA98205.1| contains similarity to
clathrin assembly protein~gene_id:K3D20.4 [Arabidopsis
thaliana] gi|19698875|gb|AAL91173.1| unknown protein
[Arabidopsis thaliana] gi|23198334|gb|AAN15694.1|
unknown protein [Arabidopsis thaliana]
Length = 544
Score = 53.5 bits (127), Expect = 3e-06
Identities = 36/84 (42%), Positives = 41/84 (47%), Gaps = 7/84 (8%)
Frame = -1
Query: 674 MHDPFFASNAMAAPHSVQMAAMSNQQQAFMYQQQQQQQQMMMMPPQQP-------AANPF 516
MH PF+ASN +AAP QMA + Q F Y Q Q MMM P QQP NPF
Sbjct: 466 MHQPFYASNGVAAPQPFQMA--NQNHQTFGY--QHQNAGMMMGPVQQPYQQQQQNMNNPF 521
Query: 515 GNAYGGATVHPYGSGMPVQSYNPY 444
GN + G+ Q YNPY
Sbjct: 522 GNPFVS-----NGNPQQPQGYNPY 540
>dbj|BAC10706.1| P0431H09.18 [Oryza sativa (japonica cultivar-group)]
Length = 541
Score = 42.4 bits (98), Expect = 0.006
Identities = 36/87 (41%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
Frame = -1
Query: 668 DPFFASNAMAAPHSVQMAAMSNQQQAFMYQQQQQQQQMMMM-----PPQQP-------AA 525
DPF SN +A P SVQMA+M+ QQ QQ MMM PP QP A
Sbjct: 461 DPFAMSNQVAPPPSVQMASMT---------QQPQQMPMMMQPNPFGPPLQPQHAGIAQAP 511
Query: 524 NPFGNAYGGATVHPYGSGMPVQSYNPY 444
NPF +A G P +GM Q+ NP+
Sbjct: 512 NPFLDA--GFGPFPASNGMHPQA-NPF 535
>gb|AAG37909.1|AF317732_1 CIA5 [Chlamydomonas reinhardtii] gi|11875321|dbj|BAB19630.1| CCM1-B
[Chlamydomonas reinhardtii] gi|11875325|dbj|BAB19632.1|
CCM1-B [Chlamydomonas reinhardtii]
Length = 698
Score = 42.0 bits (97), Expect = 0.008
Identities = 24/55 (43%), Positives = 26/55 (46%)
Frame = -1
Query: 683 QPTMHDPFFASNAMAAPHSVQMAAMSNQQQAFMYQQQQQQQQMMMMPPQQPAANP 519
QP HD + A A H+ AAM A QQQQQQQQ P PAA P
Sbjct: 283 QPPPHDAAASYLAQAQAHAQHAAAMHAVNSAHAQQQQQQQQQQQQQQPGVPAAPP 337
>gb|AAF69494.1| nuclear receptor E78A [Drosophila melanogaster]
Length = 866
Score = 42.0 bits (97), Expect = 0.008
Identities = 25/79 (31%), Positives = 40/79 (49%), Gaps = 6/79 (7%)
Frame = -1
Query: 668 DPFFASNAMAAPHSVQMAAMSNQQQAFMYQQQQQQQQMMMMPPQQ------PAANPFGNA 507
D F+ ++A+A + ++ QQ+ +QQQQQQQQ P QQ +N G
Sbjct: 163 DDFYRTSALAESVAASLSPQQQQQRQHTHQQQQQQQQQQQHPGQQQHQLNCTLSNGGGAL 222
Query: 506 YGGATVHPYGSGMPVQSYN 450
Y ++VH +G P ++N
Sbjct: 223 YTISSVHQFG---PASNHN 238
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 655,113,892
Number of Sequences: 1393205
Number of extensions: 15324450
Number of successful extensions: 109263
Number of sequences better than 10.0: 637
Number of HSP's better than 10.0 without gapping: 44335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72882
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
