Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002225A_C01 KMC002225A_c01
(658 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM20146.1| unknown protein [Arabidopsis thaliana] gi|2128123... 142 3e-33
ref|NP_565028.1| expressed protein; protein id: At1g71940.1, sup... 141 9e-33
ref|NP_192696.2| putative protein; protein id: At4g09580.1 [Arab... 134 1e-30
gb|AAM65735.1| unknown [Arabidopsis thaliana] 111 1e-23
ref|NP_567541.1| expressed protein; protein id: At4g17790.1, sup... 111 1e-23
>gb|AAM20146.1| unknown protein [Arabidopsis thaliana] gi|21281237|gb|AAM45090.1|
unknown protein [Arabidopsis thaliana]
Length = 287
Score = 142 bits (359), Expect = 3e-33
Identities = 69/79 (87%), Positives = 76/79 (95%)
Frame = -2
Query: 657 PNLFINLASPIVDVPFHIFFLATLVGLIPASYITVRAGLALGDLKSVKDLYDFKTLSVLF 478
PNLFINL+SPIVD+PFH+FFLATLVGL+PASYITVRAGLALGDL+SVKDLYDFKTLSVLF
Sbjct: 209 PNLFINLSSPIVDIPFHVFFLATLVGLMPASYITVRAGLALGDLRSVKDLYDFKTLSVLF 268
Query: 477 LIGCVAIVPTLLKRKRVYE 421
LIG ++I P LLKRKRVYE
Sbjct: 269 LIGSISIFPALLKRKRVYE 287
>ref|NP_565028.1| expressed protein; protein id: At1g71940.1, supported by cDNA:
38138., supported by cDNA: gi_18700126, supported by
cDNA: gi_20453394 [Arabidopsis thaliana]
gi|25406129|pir||C96742 unknown protein F17M19.9
[imported] - Arabidopsis thaliana
gi|12324535|gb|AAG52221.1|AC021665_4 unknown protein;
51119-52286 [Arabidopsis thaliana]
gi|18700127|gb|AAL77675.1| At1g71940/F17M19_9
[Arabidopsis thaliana] gi|20453395|gb|AAM19936.1|
At1g71940/F17M19_9 [Arabidopsis thaliana]
gi|21593331|gb|AAM65280.1| unknown [Arabidopsis
thaliana]
Length = 272
Score = 141 bits (355), Expect = 9e-33
Identities = 67/79 (84%), Positives = 77/79 (96%)
Frame = -2
Query: 657 PNLFINLASPIVDVPFHIFFLATLVGLIPASYITVRAGLALGDLKSVKDLYDFKTLSVLF 478
PNLFINLASPIVDVPFH+FFLATL+GLIPA+YITVRAGLA+GDLKSVKDLYDFKTLSVLF
Sbjct: 194 PNLFINLASPIVDVPFHVFFLATLIGLIPAAYITVRAGLAIGDLKSVKDLYDFKTLSVLF 253
Query: 477 LIGCVAIVPTLLKRKRVYE 421
LIG ++I+PT+LKRK++ E
Sbjct: 254 LIGFISILPTILKRKKIVE 272
>ref|NP_192696.2| putative protein; protein id: At4g09580.1 [Arabidopsis thaliana]
Length = 285
Score = 134 bits (337), Expect = 1e-30
Identities = 67/79 (84%), Positives = 74/79 (92%)
Frame = -2
Query: 657 PNLFINLASPIVDVPFHIFFLATLVGLIPASYITVRAGLALGDLKSVKDLYDFKTLSVLF 478
PNLFINL+SPIVD+PFH+FFLATLVGL+PASYIT AGLALGDL+SVKDLYDFKTLSVLF
Sbjct: 209 PNLFINLSSPIVDIPFHVFFLATLVGLMPASYIT--AGLALGDLRSVKDLYDFKTLSVLF 266
Query: 477 LIGCVAIVPTLLKRKRVYE 421
LIG ++I P LLKRKRVYE
Sbjct: 267 LIGSISIFPALLKRKRVYE 285
>gb|AAM65735.1| unknown [Arabidopsis thaliana]
Length = 264
Score = 111 bits (277), Expect = 1e-23
Identities = 50/76 (65%), Positives = 67/76 (87%)
Frame = -2
Query: 657 PNLFINLASPIVDVPFHIFFLATLVGLIPASYITVRAGLALGDLKSVKDLYDFKTLSVLF 478
PN FIN+ASPIVDVP+HIFFLAT +GLIPA+++TVRAGLALG+LKS+ DLYDF +++ L
Sbjct: 188 PNTFINVASPIVDVPYHIFFLATFIGLIPAAFVTVRAGLALGELKSLGDLYDFSSMATLC 247
Query: 477 LIGCVAIVPTLLKRKR 430
LIG +++ PTL+ +K+
Sbjct: 248 LIGVLSVTPTLIGKKQ 263
>ref|NP_567541.1| expressed protein; protein id: At4g17790.1, supported by cDNA:
42815. [Arabidopsis thaliana] gi|7485060|pir||B71448
hypothetical protein - Arabidopsis thaliana
gi|2245138|emb|CAB10559.1| hypothetical protein
[Arabidopsis thaliana] gi|7268532|emb|CAB78782.1|
hypothetical protein [Arabidopsis thaliana]
Length = 264
Score = 111 bits (277), Expect = 1e-23
Identities = 50/76 (65%), Positives = 67/76 (87%)
Frame = -2
Query: 657 PNLFINLASPIVDVPFHIFFLATLVGLIPASYITVRAGLALGDLKSVKDLYDFKTLSVLF 478
PN FIN+ASPIVDVP+HIFFLAT +GLIPA+++TVRAGLALG+LKS+ DLYDF +++ L
Sbjct: 188 PNTFINVASPIVDVPYHIFFLATFIGLIPAAFVTVRAGLALGELKSLGDLYDFSSMATLC 247
Query: 477 LIGCVAIVPTLLKRKR 430
LIG +++ PTL+ +K+
Sbjct: 248 LIGVLSVTPTLIGKKQ 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,942,537
Number of Sequences: 1393205
Number of extensions: 10701735
Number of successful extensions: 28815
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 27816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28781
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28006887348
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
