Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002223A_C01 KMC002223A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198123.1| putative protein; protein id: At5g27710.1 [Arab... 143 1e-33
dbj|BAC16001.1| hypothetical protein~similar to Arabidopsis thal... 115 3e-25
gb|EAA05595.1| agCP10424 [Anopheles gambiae str. PEST] 33 2.0
ref|NP_704224.1| dynein heavy chain, putative [Plasmodium falcip... 33 2.0
ref|NP_385809.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinor... 33 3.4
>ref|NP_198123.1| putative protein; protein id: At5g27710.1 [Arabidopsis thaliana]
Length = 380
Score = 143 bits (361), Expect = 1e-33
Identities = 67/88 (76%), Positives = 76/88 (86%)
Frame = -3
Query: 575 KGTNVTYDDSMNLRNILWLAPLPGDSAKSWLAPGVLVVLDARPDGIIYRDLIPDYVDFAR 396
+G++V Y+DSMNLRNILWLAPLP +S+ W+APGVLVVLDA PDGIIYRDLIPDYV F R
Sbjct: 290 RGSDVKYNDSMNLRNILWLAPLPSNSSPDWVAPGVLVVLDAHPDGIIYRDLIPDYVKFVR 349
Query: 395 TIYEDDLGNCAVDVNYLNVGSETGNYQL 312
TIYEDDLG AVDVNYLNVG+ +YQL
Sbjct: 350 TIYEDDLGTTAVDVNYLNVGAHEPDYQL 377
>dbj|BAC16001.1| hypothetical protein~similar to Arabidopsis thaliana chromosome5,
At5g27710 [Oryza sativa (japonica cultivar-group)]
Length = 380
Score = 115 bits (289), Expect = 3e-25
Identities = 56/80 (70%), Positives = 65/80 (81%)
Frame = -3
Query: 572 GTNVTYDDSMNLRNILWLAPLPGDSAKSWLAPGVLVVLDARPDGIIYRDLIPDYVDFART 393
G+NV YDDSMNLRNILWLAPLP + K+WL+PGVLVVLDA PDGIIY+D+I DYV RT
Sbjct: 295 GSNVVYDDSMNLRNILWLAPLPSNETKAWLSPGVLVVLDAHPDGIIYQDMIRDYVRDVRT 354
Query: 392 IYEDDLGNCAVDVNYLNVGS 333
IYE+ +VDVNYLNV +
Sbjct: 355 IYEE----VSVDVNYLNVAN 370
>gb|EAA05595.1| agCP10424 [Anopheles gambiae str. PEST]
Length = 2183
Score = 33.5 bits (75), Expect = 2.0
Identities = 17/36 (47%), Positives = 21/36 (58%)
Frame = -3
Query: 521 LAPLPGDSAKSWLAPGVLVVLDARPDGIIYRDLIPD 414
L PLP D A+ + A VL V GI++RDL PD
Sbjct: 964 LGPLPSDMARFYFAETVLAVEYLHSYGIVHRDLKPD 999
>ref|NP_704224.1| dynein heavy chain, putative [Plasmodium falciparum 3D7]
gi|23498962|emb|CAD51040.1| dynein heavy chain, putative
[Plasmodium falciparum 3D7]
Length = 4971
Score = 33.5 bits (75), Expect = 2.0
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 180 CKFINWPSNSMHFICATNV 124
C+F+NWP+N FIC N+
Sbjct: 948 CEFVNWPNNGKRFICKENI 966
>ref|NP_385809.1| PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium meliloti]
gi|15074637|emb|CAC46282.1| PUTATIVE TRANSCRIPTION
REGULATOR PROTEIN [Sinorhizobium meliloti]
Length = 324
Score = 32.7 bits (73), Expect = 3.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -3
Query: 497 AKSWLAPGVLVVLDARPDGIIYRDLIPDYVDFARTIYEDDL 375
A WL P + LDA PD + D PD+ DF + + DL
Sbjct: 104 AVRWLTPRLKSFLDANPDWGVRVDATPDFSDFETEVIDLDL 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,430,990
Number of Sequences: 1393205
Number of extensions: 9946965
Number of successful extensions: 28603
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 27901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28585
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
