Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002220A_C01 KMC002220A_c01
(731 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175096.1| hypothetical protein; protein id: At1g44750.1, ... 158 7e-38
pir||T04923 hypothetical protein T9A21.60 - Arabidopsis thaliana... 130 1e-29
ref|NP_193555.2| putative protein; protein id: At4g18210.1, supp... 130 1e-29
ref|NP_193556.1| putative protein; protein id: At4g18220.1 [Arab... 127 1e-28
pir||C85087 hypothetical protein AT4g08700 [imported] - Arabidop... 127 2e-28
>ref|NP_175096.1| hypothetical protein; protein id: At1g44750.1, supported by cDNA:
gi_17065411 [Arabidopsis thaliana]
gi|25350216|pir||D96506 hypothetical protein T12C22.2
[imported] - Arabidopsis thaliana
gi|8655985|gb|AAF78258.1|AC020576_2 Contains similarity
to purine permease from Arabidopsis thaliana
gb|AF078531. EST gb|AI997301 comes from this gene
gi|17065412|gb|AAL32860.1| Unknown protein [Arabidopsis
thaliana] gi|28058999|gb|AAO29976.1| Unknown protein
[Arabidopsis thaliana]
Length = 379
Score = 158 bits (400), Expect = 7e-38
Identities = 72/96 (75%), Positives = 89/96 (92%)
Frame = -1
Query: 731 EMEGFHKGEASYVLTLVWTAVAWQVCSVGAVGLIFLVSSLYSHVISTVSLTVTPIVSVIV 552
EMEG+HKG+ASYVLTLVWTAV WQVCSVG VGLIFLV+SL+S+VIST+SL VTP+ +++V
Sbjct: 270 EMEGYHKGQASYVLTLVWTAVTWQVCSVGVVGLIFLVTSLFSNVISTLSLAVTPLAALVV 329
Query: 551 FHDKMNGVKIISMLVAIWGLASYIYQNYIDDLKARR 444
F DKM+GVKI++ML+AIWG ASY+YQN+IDDLK R+
Sbjct: 330 FRDKMSGVKIMAMLIAIWGFASYVYQNHIDDLKVRQ 365
>pir||T04923 hypothetical protein T9A21.60 - Arabidopsis thaliana
gi|2832695|emb|CAA16793.1| putative protein [Arabidopsis
thaliana] gi|7268614|emb|CAB78823.1| putative protein
[Arabidopsis thaliana]
Length = 348
Score = 130 bits (328), Expect = 1e-29
Identities = 58/117 (49%), Positives = 82/117 (69%)
Frame = -1
Query: 731 EMEGFHKGEASYVLTLVWTAVAWQVCSVGAVGLIFLVSSLYSHVISTVSLTVTPIVSVIV 552
EM+ + G+ SY++ LVWTAV WQV S+G GLIF +SSL+S+ IS + L V PI++VI+
Sbjct: 230 EMDNYKHGKVSYIMNLVWTAVTWQVFSIGGTGLIFELSSLFSNAISVLGLPVVPILAVII 289
Query: 551 FHDKMNGVKIISMLVAIWGLASYIYQNYIDDLKARRTPAVVSKSSHGSSC*EYSNWE 381
FHDKMNG+K+ISM++AIWG SY+YQ Y+DD ++ + + S E S W+
Sbjct: 290 FHDKMNGLKVISMILAIWGFTSYVYQQYLDDKNLKKNHEITTTESPDPPEAEESTWQ 346
>ref|NP_193555.2| putative protein; protein id: At4g18210.1, supported by cDNA:
gi_13877726 [Arabidopsis thaliana]
gi|13877727|gb|AAK43941.1|AF370622_1 putative protein
[Arabidopsis thaliana]
Length = 149
Score = 130 bits (328), Expect = 1e-29
Identities = 58/117 (49%), Positives = 82/117 (69%)
Frame = -1
Query: 731 EMEGFHKGEASYVLTLVWTAVAWQVCSVGAVGLIFLVSSLYSHVISTVSLTVTPIVSVIV 552
EM+ + G+ SY++ LVWTAV WQV S+G GLIF +SSL+S+ IS + L V PI++VI+
Sbjct: 31 EMDNYKHGKVSYIMNLVWTAVTWQVFSIGGTGLIFELSSLFSNAISVLGLPVVPILAVII 90
Query: 551 FHDKMNGVKIISMLVAIWGLASYIYQNYIDDLKARRTPAVVSKSSHGSSC*EYSNWE 381
FHDKMNG+K+ISM++AIWG SY+YQ Y+DD ++ + + S E S W+
Sbjct: 91 FHDKMNGLKVISMILAIWGFTSYVYQQYLDDKNLKKNHEITTTESPDPPEAEESTWQ 147
>ref|NP_193556.1| putative protein; protein id: At4g18220.1 [Arabidopsis thaliana]
gi|7487850|pir||T04924 hypothetical protein T9A21.70 -
Arabidopsis thaliana gi|2832696|emb|CAA16794.1| putative
protein [Arabidopsis thaliana]
gi|7268615|emb|CAB78824.1| putative protein [Arabidopsis
thaliana]
Length = 344
Score = 127 bits (320), Expect = 1e-28
Identities = 56/105 (53%), Positives = 79/105 (74%)
Frame = -1
Query: 731 EMEGFHKGEASYVLTLVWTAVAWQVCSVGAVGLIFLVSSLYSHVISTVSLTVTPIVSVIV 552
EME + G+ SYV+ LVWTAV WQV S+G GLIF +SSL+S+ IS + L V PI++VI+
Sbjct: 226 EMENYKLGKVSYVMNLVWTAVTWQVFSIGCTGLIFELSSLFSNAISALGLPVVPILAVII 285
Query: 551 FHDKMNGVKIISMLVAIWGLASYIYQNYIDDLKARRTPAVVSKSS 417
FHDKMNG+K+ISM++AIWG SY+YQ Y+D+ +++ + + S
Sbjct: 286 FHDKMNGLKVISMILAIWGFVSYVYQQYLDETNLKKSNEIPTTES 330
>pir||C85087 hypothetical protein AT4g08700 [imported] - Arabidopsis thaliana
gi|7267512|emb|CAB77995.1| putative protein [Arabidopsis
thaliana] gi|7321059|emb|CAB82106.1| putative protein
[Arabidopsis thaliana]
Length = 432
Score = 127 bits (318), Expect = 2e-28
Identities = 60/96 (62%), Positives = 78/96 (80%)
Frame = -1
Query: 731 EMEGFHKGEASYVLTLVWTAVAWQVCSVGAVGLIFLVSSLYSHVISTVSLTVTPIVSVIV 552
EME FH+G+ YVLTLV TAV+WQ+ SVGAV LIFLVSSL+S++I T+SL VTP+ ++ V
Sbjct: 253 EMEEFHEGQVIYVLTLVGTAVSWQLGSVGAVALIFLVSSLFSNLIGTLSLIVTPLAAIAV 312
Query: 551 FHDKMNGVKIISMLVAIWGLASYIYQNYIDDLKARR 444
FHDK+ VK+++ML+A G YIYQNY+DDLK +R
Sbjct: 313 FHDKLTEVKMVAMLIAFMGFGFYIYQNYLDDLKVQR 348
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,931,963
Number of Sequences: 1393205
Number of extensions: 12589836
Number of successful extensions: 36209
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 34606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36148
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
