Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002219A_C02 KMC002219A_c02
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM08784.1|AC016780_14 Putative epimerase/dehydratase [Oryza ... 130 1e-29
ref|NP_198236.1| epimerase/dehydratase - like protein; protein i... 125 3e-28
gb|ZP_00048134.1| hypothetical protein [Magnetospirillum magneto... 48 1e-04
emb|CAD62190.1| Ata17 protein [Saccharothrix mutabilis subsp. ca... 44 0.002
gb|AAG02361.1|AF210249_20 sugar epimerase BlmG [Streptomyces ver... 40 0.024
>gb|AAM08784.1|AC016780_14 Putative epimerase/dehydratase [Oryza sativa]
Length = 378
Score = 130 bits (327), Expect = 1e-29
Identities = 61/71 (85%), Positives = 67/71 (93%)
Frame = -2
Query: 611 NSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLDKEKAKGIDLAVYGTSKVVQTQAPVQ 432
NSDNTLIKEKLGWAPTMKLKDGLR TYFWIKEQ++KEK +G+D+A YG+SKVV TQAPVQ
Sbjct: 308 NSDNTLIKEKLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQ 367
Query: 431 LGSLRAADGKE 399
LGSLRAADGKE
Sbjct: 368 LGSLRAADGKE 378
>ref|NP_198236.1| epimerase/dehydratase - like protein; protein id: At5g28840.1,
supported by cDNA: gi_16323112, supported by cDNA:
gi_16323179 [Arabidopsis thaliana]
gi|16323113|gb|AAL15291.1| AT5g28840/F7P1_20
[Arabidopsis thaliana] gi|16323180|gb|AAL15324.1|
AT5g28840/F7P1_20 [Arabidopsis thaliana]
gi|21436019|gb|AAM51587.1| AT5g28840/F7P1_20
[Arabidopsis thaliana]
Length = 377
Score = 125 bits (315), Expect = 3e-28
Identities = 59/71 (83%), Positives = 67/71 (94%)
Frame = -2
Query: 611 NSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLDKEKAKGIDLAVYGTSKVVQTQAPVQ 432
NSDN LIKEKLGWAP M+LK+GLRITYFWIKEQ++KEKAKG D+++YG+SKVV TQAPVQ
Sbjct: 307 NSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQ 366
Query: 431 LGSLRAADGKE 399
LGSLRAADGKE
Sbjct: 367 LGSLRAADGKE 377
>gb|ZP_00048134.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 106
Score = 47.8 bits (112), Expect = 1e-04
Identities = 20/40 (50%), Positives = 29/40 (72%)
Frame = -2
Query: 611 NSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLDKEKAK 492
NSDNTL++E LGW P + L++GL+ TY WI+ Q+ + K
Sbjct: 63 NSDNTLLRETLGWEPGIHLREGLKPTYRWIETQVREAAPK 102
>emb|CAD62190.1| Ata17 protein [Saccharothrix mutabilis subsp. capreolus]
Length = 384
Score = 43.9 bits (102), Expect = 0.002
Identities = 19/58 (32%), Positives = 32/58 (54%)
Frame = -2
Query: 611 NSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLDKEKAKGIDLAVYGTSKVVQTQAP 438
NSDN L++ +LGW P+ L+ G+ TY WI+ +++ V S++V+ P
Sbjct: 330 NSDNALLRAELGWEPSTPLETGMAATYHWIRSDIERRAG-----TVQAASEIVRVGDP 382
>gb|AAG02361.1|AF210249_20 sugar epimerase BlmG [Streptomyces verticillus]
Length = 325
Score = 40.0 bits (92), Expect = 0.024
Identities = 19/39 (48%), Positives = 23/39 (58%)
Frame = -2
Query: 608 SDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQLDKEKAK 492
SDNT +E LGWAP L GL TY WI+ Q+ E +
Sbjct: 284 SDNTRCRELLGWAPETSLAAGLERTYPWIERQVLAEAGR 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 504,843,754
Number of Sequences: 1393205
Number of extensions: 10570332
Number of successful extensions: 26446
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 25910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26442
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
