Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002218A_C01 KMC002218A_c01
(742 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM73765.1|AF403292_1 RNA-binding protein AKIP1 [Vicia faba] 129 4e-29
ref|NP_181639.1| RRM-containing RNA-binding protein; protein id:... 96 4e-19
gb|AAK68825.1| putative protein [Arabidopsis thaliana] gi|201483... 92 8e-18
ref|NP_567042.1| RRM-containing RNA-binding protein; protein id:... 92 8e-18
dbj|BAA90354.1| unnamed protein product [Oryza sativa (japonica ... 54 2e-06
>gb|AAM73765.1|AF403292_1 RNA-binding protein AKIP1 [Vicia faba]
Length = 515
Score = 129 bits (324), Expect = 4e-29
Identities = 76/116 (65%), Positives = 85/116 (72%), Gaps = 9/116 (7%)
Frame = -2
Query: 741 QAAAAQAAALNP----ALGQALTALLTSQGA-LGLTNLLGGLGTSGGINPVVSSAAAAGH 577
QAAA+ A LNP ALGQALTALL SQGA LGL++LLG LGTS +N AAGH
Sbjct: 401 QAAASAAQGLNPVLTPALGQALTALLASQGATLGLSDLLGSLGTSNALNH--GGVPAAGH 458
Query: 576 GVQSGYSAQPSISPGVIGGYAS---QLGLQAQYQNQQTGQGGTGRSQYGG-APYMG 421
GVQSGYSAQP+ISP V+G Y + Q+GLQ QY NQQ GQGG+GR QYGG A YMG
Sbjct: 459 GVQSGYSAQPTISPSVMGAYGNSVPQVGLQVQYPNQQIGQGGSGRGQYGGAASYMG 514
>ref|NP_181639.1| RRM-containing RNA-binding protein; protein id: At2g41060.1,
supported by cDNA: gi_16612301 [Arabidopsis thaliana]
gi|7487621|pir||T02113 probable RNA-binding protein
At2g41060 [imported] - Arabidopsis thaliana
gi|3402711|gb|AAD12005.1| putative RNA-binding protein
[Arabidopsis thaliana]
gi|16612302|gb|AAL27512.1|AF439844_1 At2g41060/T3K9.17
[Arabidopsis thaliana] gi|22137136|gb|AAM91413.1|
At2g41060/T3K9.17 [Arabidopsis thaliana]
Length = 451
Score = 96.3 bits (238), Expect = 4e-19
Identities = 58/106 (54%), Positives = 65/106 (60%), Gaps = 6/106 (5%)
Frame = -2
Query: 717 ALNPALGQALTALLTSQGA-LGLTNLLGG--LGTSGGINPVVSSAAAAGHGVQSGYSAQP 547
A NPA+GQALTALL SQGA LGL G LGT G +P A G+ SGY Q
Sbjct: 352 AFNPAIGQALTALLASQGAGLGLNQAFGQALLGTLGTASP------GAVGGMPSGYGTQA 405
Query: 546 SISPGVIGGYASQLGLQAQYQNQQTGQGGTGRSQYG---GAPYMGQ 418
+ISPGV GY +Q G Q YQ QQ GQGG GR Q+G G PYMG+
Sbjct: 406 NISPGVYPGYGAQAGYQGGYQTQQPGQGGAGRGQHGAGYGGPYMGR 451
>gb|AAK68825.1| putative protein [Arabidopsis thaliana] gi|20148397|gb|AAM10089.1|
putative protein [Arabidopsis thaliana]
Length = 478
Score = 92.0 bits (227), Expect = 8e-18
Identities = 55/111 (49%), Positives = 67/111 (59%), Gaps = 10/111 (9%)
Frame = -2
Query: 723 AAALNPALGQALTALLTSQGALGLTN------LLGGLGTSGGINPVVSSAAAAGHGVQSG 562
A +NPA+GQALTALL SQGA N LLG LGT+ G+NP G G+ +G
Sbjct: 374 AQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLGTAAGVNP------GNGVGMPTG 427
Query: 561 YSAQPSISPGVIGGYASQLGLQAQYQNQQTGQGGTGRSQYG----GAPYMG 421
Y Q +++PG + GY +Q GLQ YQ Q GQGGT R Q+G G PYMG
Sbjct: 428 YGTQ-AMAPGTMPGYGTQPGLQGGYQTPQPGQGGTSRGQHGVGPYGTPYMG 477
>ref|NP_567042.1| RRM-containing RNA-binding protein; protein id: At3g56860.1,
supported by cDNA: gi_14194148, supported by cDNA:
gi_14335131, supported by cDNA: gi_14596194, supported
by cDNA: gi_20148396, supported by cDNA: gi_20259481
[Arabidopsis thaliana] gi|11358431|pir||T51274
hypothetical protein T8M16_190 - Arabidopsis thaliana
gi|9663005|emb|CAC00749.1| putative protein [Arabidopsis
thaliana] gi|14194149|gb|AAK56269.1|AF367280_1
AT3g56860/T8M16_190 [Arabidopsis thaliana]
gi|14335132|gb|AAK59846.1| AT3g56860/T8M16_190
[Arabidopsis thaliana] gi|19682816|emb|CAD28672.1| UBP1
interacting protein 2a [Arabidopsis thaliana]
gi|20259482|gb|AAM13861.1| unknown protein [Arabidopsis
thaliana] gi|21436451|gb|AAM51426.1| unknown protein
[Arabidopsis thaliana] gi|22137068|gb|AAM91379.1|
At3g56860/T8M16_190 [Arabidopsis thaliana]
Length = 478
Score = 92.0 bits (227), Expect = 8e-18
Identities = 55/111 (49%), Positives = 67/111 (59%), Gaps = 10/111 (9%)
Frame = -2
Query: 723 AAALNPALGQALTALLTSQGALGLTN------LLGGLGTSGGINPVVSSAAAAGHGVQSG 562
A +NPA+GQALTALL SQGA N LLG LGT+ G+NP G G+ +G
Sbjct: 374 AQVINPAIGQALTALLASQGAGLAFNPAIGQALLGSLGTAAGVNP------GNGVGMPTG 427
Query: 561 YSAQPSISPGVIGGYASQLGLQAQYQNQQTGQGGTGRSQYG----GAPYMG 421
Y Q +++PG + GY +Q GLQ YQ Q GQGGT R Q+G G PYMG
Sbjct: 428 YGTQ-AMAPGTMPGYGTQPGLQGGYQTPQPGQGGTSRGQHGVGPYGTPYMG 477
>dbj|BAA90354.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 490
Score = 53.9 bits (128), Expect = 2e-06
Identities = 44/99 (44%), Positives = 52/99 (52%), Gaps = 2/99 (2%)
Frame = -2
Query: 729 AQAAALNPALGQALTALLTSQ-GALGLTNLLG-GLGTSGGINPVVSSAAAAGHGVQSGYS 556
A +NPALGQALTA+L SQ G LGL N+LG G SG NP A+AG G SG
Sbjct: 403 AGGPGVNPALGQALTAILASQGGGLGLNNILGVGANGSGLPNP----GASAGLG-SSGLP 457
Query: 555 AQPSISPGVIGGYASQLGLQAQYQNQQTGQGGTGRSQYG 439
P + G +GGY G + T GG GR+ G
Sbjct: 458 GMPG-AGGYLGGYGGGGGYGS------TPPGGPGRNYMG 489
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 663,442,883
Number of Sequences: 1393205
Number of extensions: 15861714
Number of successful extensions: 91066
Number of sequences better than 10.0: 275
Number of HSP's better than 10.0 without gapping: 61789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86378
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
