Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002215A_C01 KMC002215A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A... 153 3e-61
gb|AAK55703.1|AF378900_1 At2g04520/T1O3.7 [Arabidopsis thaliana]... 154 1e-60
ref|NP_178531.1| putative translation initiation factor eIF-1A; ... 154 1e-60
emb|CAC80989.1| translation initiation factor (eIF-1A) [Beta vul... 150 4e-60
ref|NP_198418.1| expressed protein; protein id: At5g35680.2, sup... 149 2e-59
>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A (EIF-1A) (EIF-4C)
gi|7488758|pir||T08000 translation initiation factor
eIF-1A - common sainfoin gi|2565421|gb|AAB81996.1|
eukaryotic translation initiation factor eIF-1A
[Onobrychis viciifolia]
Length = 145
Score = 153 bits (387), Expect(2) = 3e-61
Identities = 71/73 (97%), Positives = 72/73 (98%)
Frame = +3
Query: 87 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 266
MPKNKGKGGKNRKRGKNEADD+KRELVFKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1 MPKNKGKGGKNRKRGKNEADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
Query: 267 IRGKMHKKVWIAA 305
IRGKMHKKVWIAA
Sbjct: 61 IRGKMHKKVWIAA 73
Score = 103 bits (256), Expect(2) = 3e-61
Identities = 54/61 (88%), Positives = 56/61 (91%), Gaps = 1/61 (1%)
Frame = +2
Query: 308 GDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIG-GGLDEEDDADAN 484
GDI+LVGLRDYQDDKADVILK MPDEARLLKAYGELPD+TRLNEGIG GGLDEE D AN
Sbjct: 74 GDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLNEGIGAGGLDEEMDT-AN 132
Query: 485 D 487
D
Sbjct: 133 D 133
>gb|AAK55703.1|AF378900_1 At2g04520/T1O3.7 [Arabidopsis thaliana] gi|15450561|gb|AAK96458.1|
At2g04520/T1O3.7 [Arabidopsis thaliana]
Length = 145
Score = 154 bits (389), Expect(2) = 1e-60
Identities = 71/73 (97%), Positives = 72/73 (98%)
Frame = +3
Query: 87 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 266
MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
Query: 267 IRGKMHKKVWIAA 305
IRGKMHKKVWIAA
Sbjct: 61 IRGKMHKKVWIAA 73
Score = 100 bits (248), Expect(2) = 1e-60
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = +2
Query: 308 GDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIGGGLDEEDDADAND 487
GDIVLVGLRDYQDDKADVILKYM DEARLLKAYGELP++TRLNEGI G L+++DD + +D
Sbjct: 74 GDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDNNDDD 133
>ref|NP_178531.1| putative translation initiation factor eIF-1A; protein id:
At2g04520.1, supported by cDNA: 99687., supported by
cDNA: gi_14190444 [Arabidopsis thaliana]
gi|25411086|pir||D84458 probable translation initiation
factor eIF-1A [imported] - Arabidopsis thaliana
gi|4587600|gb|AAD25828.1| putative translation
initiation factor eIF-1A [Arabidopsis thaliana]
gi|21618180|gb|AAM67230.1| putative translation
initiation factor eIF-1A [Arabidopsis thaliana]
Length = 145
Score = 154 bits (389), Expect(2) = 1e-60
Identities = 71/73 (97%), Positives = 72/73 (98%)
Frame = +3
Query: 87 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 266
MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRCEA CIDGTKRLCH
Sbjct: 1 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60
Query: 267 IRGKMHKKVWIAA 305
IRGKMHKKVWIAA
Sbjct: 61 IRGKMHKKVWIAA 73
Score = 100 bits (248), Expect(2) = 1e-60
Identities = 48/60 (80%), Positives = 55/60 (91%)
Frame = +2
Query: 308 GDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIGGGLDEEDDADAND 487
GDIVLVGLRDYQDDKADVILKYM DEARLLKAYGELP++TRLNEGI G L+++DD + +D
Sbjct: 74 GDIVLVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDNNDDD 133
>emb|CAC80989.1| translation initiation factor (eIF-1A) [Beta vulgaris]
Length = 144
Score = 150 bits (379), Expect(2) = 4e-60
Identities = 70/73 (95%), Positives = 71/73 (96%)
Frame = +3
Query: 87 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 266
MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQV+RMLGNGRCEATCID KRLCH
Sbjct: 1 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVVRMLGNGRCEATCIDYVKRLCH 60
Query: 267 IRGKMHKKVWIAA 305
IRGKMHKKVWIAA
Sbjct: 61 IRGKMHKKVWIAA 73
Score = 102 bits (254), Expect(2) = 4e-60
Identities = 50/60 (83%), Positives = 54/60 (89%)
Frame = +2
Query: 308 GDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIGGGLDEEDDADAND 487
GDI+LVGLRDYQDDKADVILKYMPDEARLLKAYGELPD+ RLNEG+ LDEEDD A+D
Sbjct: 74 GDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDNIRLNEGV-ANLDEEDDGGADD 132
>ref|NP_198418.1| expressed protein; protein id: At5g35680.2, supported by cDNA:
11304., supported by cDNA: gi_14596002 [Arabidopsis
thaliana] gi|9758641|dbj|BAB09265.1| contains similarity
to translation initiation factor~gene_id:MXH1.2
[Arabidopsis thaliana] gi|14596003|gb|AAK68729.1|
Unknown protein [Arabidopsis thaliana]
gi|20148741|gb|AAM10261.1| unknown protein [Arabidopsis
thaliana] gi|21536837|gb|AAM61169.1| putative
translation initiation factor eIF-1A [Arabidopsis
thaliana]
Length = 145
Score = 149 bits (377), Expect(2) = 2e-59
Identities = 68/73 (93%), Positives = 70/73 (95%)
Frame = +3
Query: 87 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTKRLCH 266
MPKNKGKGGKNRKRGKNEADDEKREL+FKEDGQEYAQVLRMLGNGRC+ CIDG KRLCH
Sbjct: 1 MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCDVMCIDGVKRLCH 60
Query: 267 IRGKMHKKVWIAA 305
IRGKMHKKVWIAA
Sbjct: 61 IRGKMHKKVWIAA 73
Score = 100 bits (250), Expect(2) = 2e-59
Identities = 48/60 (80%), Positives = 53/60 (88%)
Frame = +2
Query: 308 GDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIGGGLDEEDDADAND 487
GDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++TRLNEGI G LD++DD D
Sbjct: 74 GDIILVGLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLDDDDDVVGED 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,726,661
Number of Sequences: 1393205
Number of extensions: 12468335
Number of successful extensions: 131999
Number of sequences better than 10.0: 1149
Number of HSP's better than 10.0 without gapping: 79515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122320
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
