Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC002214A_C01 KMC002214A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42254.1| unknown protein [Arabidopsis thaliana] gi|289730... 99 6e-20
dbj|BAB90349.1| B1012D10.25 [Oryza sativa (japonica cultivar-gro... 65 1e-09
gb|AAO51828.1| similar to Plasmodium falciparum. Hypothetical pr... 42 0.006
gb|AAB40929.1| LimA [Dictyostelium discoideum] 41 0.014
ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7... 41 0.018
>dbj|BAC42254.1| unknown protein [Arabidopsis thaliana] gi|28973027|gb|AAO63838.1|
unknown protein [Arabidopsis thaliana]
Length = 262
Score = 99.0 bits (245), Expect = 6e-20
Identities = 54/91 (59%), Positives = 62/91 (67%), Gaps = 3/91 (3%)
Frame = -3
Query: 670 GCSDANGNN--GNESGYGSEPGYRGDAEFGYGGDEFDEEEDDPRLLFWGDQLGAADSKME 497
G ANG + GNESGYGSEPGYRGDAEFGY GDEFD+EE+D + LFWGD DS M
Sbjct: 177 GFGFANGVDPMGNESGYGSEPGYRGDAEFGY-GDEFDDEEEDVKPLFWGD----TDSTMG 231
Query: 496 MVGENTLLDQKSHHRCRRRK-HDCRMFDALR 407
M GE D K RCRRR+ HD + D++R
Sbjct: 232 MSGETKFSDSKPQFRCRRRRQHDYKTVDSMR 262
>dbj|BAB90349.1| B1012D10.25 [Oryza sativa (japonica cultivar-group)]
Length = 213
Score = 64.7 bits (156), Expect = 1e-09
Identities = 33/58 (56%), Positives = 38/58 (64%), Gaps = 2/58 (3%)
Frame = -3
Query: 685 GFGVSGCSDANGNNGNESGYGSEPGYRGDAEFGYGGDEFDEEEDDPR--LLFWGDQLG 518
G G G A +SGYGSEPGYRGD E GY GDE DEEE+D R L FWG+++G
Sbjct: 152 GSGSGGTGAAAEVAAADSGYGSEPGYRGDVELGY-GDEIDEEEEDGRQQLFFWGEEIG 208
>gb|AAO51828.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 803
Score = 42.4 bits (98), Expect = 0.006
Identities = 25/54 (46%), Positives = 33/54 (60%)
Frame = +3
Query: 501 ILESAAPSWSPQNNNLGSSSSSSNSSPPYPNSASPRYPGSLPYPDSFPLLPLAS 662
I +S++PS SP SSSSS+SSP P+S SP S+P P FP + L+S
Sbjct: 568 INDSSSPSSSPP-----PSSSSSSSSPSSPSSTSPSLLSSIPNPSLFPQISLSS 616
>gb|AAB40929.1| LimA [Dictyostelium discoideum]
Length = 623
Score = 41.2 bits (95), Expect = 0.014
Identities = 17/44 (38%), Positives = 24/44 (53%), Gaps = 1/44 (2%)
Frame = +1
Query: 565 HQTHPLHIQTQHPHDTQVHSHTQTHSHYCH*H-QNTHSPQTQQH 693
H HP ++ HPH + HSH+ +H + H H Q+ HS Q H
Sbjct: 131 HHAHPNPLEHSHPHQSHSHSHSHSHPQHPHSHPQHPHSHPHQSH 174
Score = 35.0 bits (79), Expect = 0.99
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +1
Query: 550 DHLLLHQTHP---LHIQTQHPHDTQVHSHTQTHSHYCH*HQNTHSPQT 684
+H HQ+H H QHPH H H +H H H H + HS T
Sbjct: 139 EHSHPHQSHSHSHSHSHPQHPHSHPQHPH--SHPHQSHSHSHAHSQPT 184
Score = 33.1 bits (74), Expect = 3.8
Identities = 25/54 (46%), Positives = 26/54 (47%)
Frame = +1
Query: 529 HPKTTIWDHLLLHQTHPLHIQTQHPHDTQVHSHTQTHSHYCH*HQNTHSPQTQQ 690
+ KT I D HQ Q QH H Q HSH Q HSH H HQ H P QQ
Sbjct: 345 YSKTFITDDPNYHQNQN---QNQH-HSHQHHSH-QHHSHQHHHHQ--HQPYQQQ 391
Score = 32.3 bits (72), Expect = 6.4
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 589 QTQHPHDTQVHSHTQTHSHYCH*HQNTHS-PQTQQH 693
Q QH T VH H T SH+ H HQ++HS P + H
Sbjct: 192 QQQHSLSTVVHPHNATPSHHHH-HQHSHSQPHSFDH 226
>ref|NP_700944.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496006|gb|AAN35668.1|AE014837_10 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1477
Score = 40.8 bits (94), Expect = 0.018
Identities = 28/72 (38%), Positives = 38/72 (51%), Gaps = 13/72 (18%)
Frame = +3
Query: 471 SSKVFSPTISILESAAPSWSPQNNNLGSSSSSSNSSP-----PYPNSASPRYPGSLP--- 626
SS++ SP S L S +PS SP ++ S SSS +SSP P P+S+ P S P
Sbjct: 541 SSQLSSPLSSPLSSPSPSSSPSSSPSSSPSSSPSSSPSPSSSPSPSSSPSSSPSSSPSSP 600
Query: 627 -----YPDSFPL 647
Y D+FP+
Sbjct: 601 PSPLSYKDNFPI 612
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 621,173,163
Number of Sequences: 1393205
Number of extensions: 14218865
Number of successful extensions: 76374
Number of sequences better than 10.0: 279
Number of HSP's better than 10.0 without gapping: 51637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68835
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
